RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 LAMP3Q9UQV4 416 aa5□□□□□ -1.61
VIPAS39-204ENST00000553576 RBM7Q9Y580 266 aaKnown RBP5□□□□□ -1.61
VIPAS39-204ENST00000553576 MMP24Q9Y5R2 645 aa5□□□□□ -1.61
VIPAS39-204ENST00000553576 WSB1Q9Y6I7 421 aa5□□□□□ -1.61
VIPAS39-204ENST00000553576 TET2Q6N021 2002 aaPredicted RBP5□□□□□ -1.61
VIPAS39-204ENST00000553576 DSPP15924 2871 aaKnown RBP5□□□□□ -1.61
VIPAS39-204ENST00000553576 DCHS1Q96JQ0 3298 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 A0A0G2JRQ6 117 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 IGHV3-64DA0A0J9YX35 117 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 IGSF23A1L1A6 192 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 FAM24AA6NFZ4 105 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 FAM90A9PA6NNJ1 464 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TRIM77I1YAP6 450 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TOR1AO14656 332 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TNFRSF13BO14836 293 aaPredicted RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TNFSF12O43508 249 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 SYNGR2O43760 224 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 FBXO24O75426 580 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 ATG12O94817 140 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 LY86O95711 162 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TMEM50AO95807 157 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 CRYZL1O95825 349 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 SCGB1D2O95969 90 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 IGKV1-5P01602 117 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TNFRSF1AP19438 455 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 CAV2P51636 162 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 F2RL1P55085 397 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 LOXL3P58215 753 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 BRWD1-AS2P59051 145 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 POLR2GP62487 172 aaKnown RBP eCLIP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 RPL23AP62750 156 aaKnown RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 VAMP2P63027 116 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 TNFAIP6P98066 277 aaPredicted RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 CATR1Q13166 79 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNF266Q14584 549 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 ADIPOQQ15848 244 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 AARDQ4LEZ3 155 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 SPRNQ5BIV9 151 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 FAM209AQ5JX71 171 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 STUMQ69YW2 141 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 SP5Q6BEB4 398 aaPredicted RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNF788Q6ZQV5 615 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 MOGAT3Q86VF5 341 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 SPAG16Q8N0X2 631 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 FGFRL1Q8N441 504 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 OR52L2PQ8NGH6 319 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 OR51H1Q8NH63 302 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 CD300LFQ8TDQ1 290 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 MRGPRDQ8TDS7 321 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 NINJ1Q92982 152 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 C14orf79Q96F83 325 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 BSCL2Q96G97 398 aaPredicted RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 GPHA2Q96T91 129 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 PARD6GQ9BYG4 376 aaPredicted RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 CACFD1Q9UGQ2 172 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 PPP1R3CQ9UQK1 317 aa4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 STRAPQ9Y3F4 350 aaKnown RBP4.99□□□□□ -1.61
VIPAS39-204ENST00000553576 A0A1B0GW64 132 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 TMEM218A2RU14 115 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 C17orf100A8MU93 164 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNF705EA8MWA4 302 aaPredicted RBP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 UMAD1C9J7I0 102 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 LGALS8O00214 317 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 WRBO00258 174 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 RAB29O14966 203 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 RBFOX2O43251 390 aaKnown RBP eCLIP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 TXNL1O43396 289 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 SPRY3O43610 288 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 PROP1O75360 226 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 MED6O75586 246 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 DFFBO76075 338 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 CLDN14O95500 239 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 FSTL3O95633 263 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 CLDN1O95832 211 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 CD5P06127 495 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 OR8U8P0C7N1 319 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 CA7P43166 264 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 LPAR6P43657 344 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 SULT1A1P50225 295 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 RPL30P62888 115 aaKnown RBP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 BSPH1Q075Z2 132 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 KLRB1Q12918 225 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 C17orf58Q2M2W7 97 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 Q3ZCU0 254 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 MIDNQ504T8 468 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 NCMAPQ5T1S8 102 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 PXDC1Q5TGL8 231 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 PRR18Q8N4B5 295 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 ST6GALNAC3Q8NDV1 305 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 BPIFCQ8NFQ6 507 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 OR10A7Q8NGE5 316 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 GNPNAT1Q96EK6 184 aaPredicted RBP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 C5orf30Q96GV9 206 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 WFIKKN1Q96NZ8 548 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 SCRT1Q9BWW7 348 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 PARP12Q9H0J9 701 aaKnown RBP4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 OR2D2Q9H210 308 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 SMDT1Q9H4I9 107 aa4.98□□□□□ -1.61
VIPAS39-204ENST00000553576 NARFLQ9H6Q4 476 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms