RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 TMEM95Q3KNT9 176 aa11.24□□□□□ -0.61
PTCH1-226ENST00000553011 ABCA11PQ4W5N1 156 aa11.24□□□□□ -0.61
PTCH1-226ENST00000553011 SNX29P2Q8IUI4 249 aa11.24□□□□□ -0.61
PTCH1-226ENST00000553011 DRAXINQ8NBI3 349 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-226ENST00000553011 SNAPC3Q92966 411 aa11.24□□□□□ -0.61
PTCH1-226ENST00000553011 RBM38Q9H0Z9 239 aaKnown RBP11.24□□□□□ -0.61
PTCH1-226ENST00000553011 OR2D2Q9H210 308 aa11.24□□□□□ -0.61
PTCH1-226ENST00000553011 IFT46Q9NQC8 304 aa11.24□□□□□ -0.61
PTCH1-226ENST00000553011 J3QRK9 145 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 LINC00205P59089 165 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 ARPC4P59998 168 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 ARSJQ5FYB0 599 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-226ENST00000553011 C11orf88Q6PI97 169 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 FAM131AQ6UXB0 335 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 C5orf56Q8N8D9 126 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 C5orf30Q96GV9 206 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 GHITMQ9H3K2 345 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 PLSCR3Q9NRY6 295 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 SERTAD4Q9NUC0 356 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 EXTL2Q9UBQ6 330 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 ANAPC10Q9UM13 185 aa11.23□□□□□ -0.61
PTCH1-226ENST00000553011 RBM7Q9Y580 266 aaKnown RBP11.23□□□□□ -0.61
PTCH1-226ENST00000553011 M0QZK8 103 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 M0R1X1 148 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 RGS5O15539 181 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 TNCP24821 2201 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 F2RL1P55085 397 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 C9orf152Q5JTZ5 239 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 TET2Q6N021 2002 aaPredicted RBP11.22□□□□□ -0.61
PTCH1-226ENST00000553011 LAX1Q8IWV1 398 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 KLHDC1Q8N7A1 406 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 GPX8Q8TED1 209 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 RITA1Q96K30 269 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 SLIRPQ9GZT3 109 aaKnown RBP11.22□□□□□ -0.61
PTCH1-226ENST00000553011 SDHAF2Q9NX18 166 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 OR2W1Q9Y3N9 320 aa11.22□□□□□ -0.61
PTCH1-226ENST00000553011 IGKV1D-13A0A0B4J2D9 117 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 NCBP2LA6PVI3 153 aaKnown RBP11.21□□□□□ -0.61
PTCH1-226ENST00000553011 H0YJW9 148 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 FGF16O43320 207 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 TUSC2O75896 110 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 IGKV1-13P0DP09 117 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 VSIG10L2P0DP72 767 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 CNTFRP26992 372 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 VDAC2P45880 294 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-226ENST00000553011 ACTBP60709 375 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 RNASE12Q5GAN4 147 aaKnown RBP11.21□□□□□ -0.61
PTCH1-226ENST00000553011 SHISA2Q6UWI4 295 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 Q8N9W7 124 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 ZNF383Q8NA42 475 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.21□□□□□ -0.61
PTCH1-226ENST00000553011 RSL24D1Q9UHA3 163 aaKnown RBP11.21□□□□□ -0.61
PTCH1-226ENST00000553011 ADAM30Q9UKF2 790 aa11.21□□□□□ -0.61
PTCH1-226ENST00000553011 OR5H14A6NHG9 310 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 OR5H8P0DN80 308 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 NAT1P18440 290 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 AADACP22760 399 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 FCGR2CP31995 323 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 LUMP51884 338 aaPredicted RBP11.2□□□□□ -0.62
PTCH1-226ENST00000553011 CDK10Q15131 360 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 MMDQ15546 238 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 OR5AP2Q8NGF4 316 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 OR5AN1Q8NGI8 311 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 ABHD1Q96SE0 405 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 CITED1Q99966 193 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 DCUN1D5Q9BTE7 237 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 C6orf62Q9GZU0 229 aaPredicted RBP11.2□□□□□ -0.62
PTCH1-226ENST00000553011 SCPEP1Q9HB40 452 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 NECAP2Q9NVZ3 263 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 GAB2Q9UQC2 676 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 MGAM2Q2M2H8 2515 aa11.2□□□□□ -0.62
PTCH1-226ENST00000553011 H7C2Y5 167 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 PMP2P02689 132 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 RFX2P48378 723 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 HIST2H2BDQ6DRA6 164 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 FAM71E2Q8N5Q1 922 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 OR8H1Q8NGG4 311 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 MCFD2Q8NI22 146 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 WNT10AQ9GZT5 417 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 WASHC3Q9Y3C0 194 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 VWFP04275 2813 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 PKD1L1Q8TDX9 2849 aa11.19□□□□□ -0.62
PTCH1-226ENST00000553011 ZNF701M0R085 212 aaPredicted RBP11.18□□□□□ -0.62
PTCH1-226ENST00000553011 SULT1C2O00338 296 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 PEX14O75381 377 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 APOA2P02652 100 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 HLA-DMAP28067 261 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 MC5RP33032 325 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 LYSMD2Q8IV50 215 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 ZNF645Q8N7E2 425 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 C11orf44Q8N8P7 122 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 OR5H2Q8NGV7 314 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 OR52I2Q8NH67 350 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 DIRAS2Q96HU8 199 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 RASL11BQ9BPW5 248 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 NXF2Q9GZY0 626 aaKnown RBP11.18□□□□□ -0.62
PTCH1-226ENST00000553011 SLC35D1Q9NTN3 355 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 LIN7CQ9NUP9 197 aaKnown RBP11.18□□□□□ -0.62
PTCH1-226ENST00000553011 EHFQ9NZC4 300 aa11.18□□□□□ -0.62
PTCH1-226ENST00000553011 LINC01548A6NM66 108 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms