RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 IGFL3Q6UXB1 125 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 LRRN1Q6UXK5 716 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 DCXRQ7Z4W1 244 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 SAMD9LQ8IVG5 1584 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 ZNF561Q8N587 486 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 BPIFB6Q8NFQ5 453 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 PTH2Q96A98 100 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 ACY3Q96HD9 319 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 OR7D2Q96RA2 312 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 RPUSD1Q9UJJ7 312 aaKnown RBP3.4□□□□□ -1.87
LIMA1-210ENST00000552045 GOLGB1Q14789 3259 aaKnown RBP3.4□□□□□ -1.87
LIMA1-210ENST00000552045 CUL9Q8IWT3 2517 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 MYOM2P54296 1465 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 A0A0C4DFX4 3053 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 SLIT1O75093 1534 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 TMEM2Q9UHN6 1383 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 KMT2EQ8IZD2 1858 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 TEX50A0A1B0GTY4 177 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 OR13C7P0DN81 318 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 NQO1P15559 274 aaKnown RBP3.39□□□□□ -1.87
LIMA1-210ENST00000552045 CTLA4P16410 223 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 CRABP2P29373 138 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 HPCAP84074 193 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 PPP1R1AQ13522 171 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 MAPK14Q16539 360 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 LCN8Q6JVE9 175 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 TNFAIP8L2Q6P589 184 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-210ENST00000552045 OTUB2Q96DC9 234 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 C8orf76Q96K31 380 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 GNB1LQ9BYB4 327 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 EIF5A2Q9GZV4 153 aaKnown RBP3.39□□□□□ -1.87
LIMA1-210ENST00000552045 UCK1Q9HA47 277 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 BABAM2Q9NXR7 383 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 TAS2R1Q9NYW7 299 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 OR5V1Q9UGF6 321 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 LINC00588Q9Y4M8 146 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 OR51B4Q9Y5P0 310 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 U3KQK5 164 aa3.39□□□□□ -1.87
LIMA1-210ENST00000552045 TRBV24-1A0A075B6N3 115 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 HLA-DRAP01903 254 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 IL6P05231 212 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 OR12D1P0DN82 309 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 NKX2-5P52952 324 aaPredicted RBP3.38□□□□□ -1.87
LIMA1-210ENST00000552045 ACTBP60709 375 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 CXCR4P61073 352 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 ACTG1P63261 375 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 TMEM267Q0VDI3 215 aaPredicted RBP3.38□□□□□ -1.87
LIMA1-210ENST00000552045 IL15RAQ13261 267 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 APOFQ13790 326 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 LYZL2Q7Z4W2 148 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 LRP11Q86VZ4 500 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 C10orf67Q8IYJ2 551 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 RAB8BQ92930 207 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 TMBIM1Q969X1 311 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 TESCQ96BS2 214 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 MED18Q9BUE0 208 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 ZNF443Q9Y2A4 671 aaPredicted RBP3.38□□□□□ -1.87
LIMA1-210ENST00000552045 HDGFL3Q9Y3E1 203 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 NUP188Q5SRE5 1749 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 TULP4Q9NRJ4 1543 aa3.38□□□□□ -1.87
LIMA1-210ENST00000552045 SSH2Q76I76 1423 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 A0A1W2PQ67 120 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 EEF1E1O43324 174 aaKnown RBP3.37□□□□□ -1.87
LIMA1-210ENST00000552045 SH2D1AO60880 128 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 IFNA5P01569 189 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 RPL12P30050 165 aaKnown RBP3.37□□□□□ -1.87
LIMA1-210ENST00000552045 HSPA9P38646 679 aaKnown RBP3.37□□□□□ -1.87
LIMA1-210ENST00000552045 AP2S1P53680 142 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-210ENST00000552045 FOXA1P55317 472 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 DEFA6Q01524 100 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 FLI1Q01543 452 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-210ENST00000552045 PDK2Q15119 407 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 PDGFRLQ15198 375 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 RGS21Q2M5E4 152 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 C10orf91Q5T1B1 145 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 CD200R1LQ6Q8B3 271 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 ATP5L2Q7Z4Y8 100 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 MED28Q9H204 178 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 HRASLSQ9HDD0 168 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 SLC23A2Q9UGH3 650 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 TMEM131LA2VDJ0 1609 aa3.37□□□□□ -1.87
LIMA1-210ENST00000552045 BRD4O60885 1362 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-210ENST00000552045 RREB1Q92766 1687 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 TNRC18O15417 2968 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-210ENST00000552045 TNS1Q9HBL0 1735 aaKnown RBP3.36□□□□□ -1.87
LIMA1-210ENST00000552045 FYCO1Q9BQS8 1478 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 NEXMIFQ5QGS0 1516 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 EHBP1L1Q8N3D4 1523 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 ATAD5Q96QE3 1844 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 SPRR5A0A1B0GTR4 108 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 SMIM23A6NLE4 172 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 C15orf65H3BRN8 121 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 LECT2O14960 151 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 TGOLN2O43493 480 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 DENRO43583 198 aaKnown RBP3.36□□□□□ -1.87
LIMA1-210ENST00000552045 IGHMP01871 453 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 ISG15P05161 165 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 RPS12P25398 132 aaKnown RBP3.36□□□□□ -1.87
LIMA1-210ENST00000552045 LINC00313P59037 77 aa3.36□□□□□ -1.87
LIMA1-210ENST00000552045 BSPH1Q075Z2 132 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms