RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, human

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-210	ENST00000551981	MED21	Q13503	144 aa		10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	FXYD3	Q14802	87 aa		10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	IL34	Q6ZMJ4	242 aa		10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	UQCC2	Q9BRT2	126 aa		10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	THAP7	Q9BT49	309 aa	Predicted RBP	10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	C9orf16	Q9BUW7	83 aa		10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	CHMP1A	Q9HD42	196 aa	Predicted RBP	10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	RETN	Q9HD89	108 aa		10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.81	□□□□□ -0.68
CHMP1A-210	ENST00000551981	ITGB1BP1	O14713	200 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	CNIH1	O95406	144 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	LALBA	P00709	142 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	RPS16	P62249	146 aa	Known RBP	10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SMN1	Q16637	294 aa	Known RBP	10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	ZFP1	Q6P2D0	407 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	MOB1B	Q7L9L4	216 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SVOP	Q8N4V2	548 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	OR5T1	Q8NG75	326 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SETD6	Q8TBK2	473 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	EDARADD	Q8WWZ3	215 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	ABHD14B	Q96IU4	210 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	CYYR1	Q96J86	154 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	PGLYRP3	Q96LB9	341 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SLC29A1	Q99808	456 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SULT4A1	Q9BR01	284 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	FAAP24	Q9BTP7	215 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	HIPK2	Q9H2X6	1198 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SIGLEC8	Q9NYZ4	499 aa		10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981	DIMT1	Q9UNQ2	313 aa	Known RBP	10.8	□□□□□ -0.68
CHMP1A-210	ENST00000551981		H3BNX3	289 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	APOA2	P02652	100 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	UBB	P0CG47	229 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	RPEL1	Q2QD12	228 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	ZFP41	Q8N8Y5	198 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	OR2K2	Q8NGT1	345 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	THRSP	Q92748	146 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	TMEM68	Q96MH6	324 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	DERL3	Q96Q80	235 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	FAM110A	Q9BQ89	295 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	PEMT	Q9UBM1	199 aa		10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	PEF1	Q9UBV8	284 aa	Known RBP	10.79	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SLC25A17	O43808	307 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	WBP4	O75554	376 aa	Known RBP	10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	TPPP	O94811	219 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	OR2A4	O95047	310 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	BRI3	O95415	125 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	NAPSA	O96009	420 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	IGKV1-16	P04430	117 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	CSN3	P07498	182 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	ZBTB25	P24278	435 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	MAPK3	P27361	379 aa	Predicted RBP	10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	LGALS7	P47929	136 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	TAS2R43	P59537	309 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	CD81	P60033	236 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	C6orf201	Q7Z4U5	140 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	PDPN	Q86YL7	162 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	LAX1	Q8IWV1	398 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	ZNF555	Q8NEP9	628 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	TMEM80	Q96HE8	168 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	USMG5	Q96IX5	58 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	AGMAT	Q9BSE5	352 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	PARP12	Q9H0J9	701 aa	Known RBP	10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	C11orf54	Q9H0W9	315 aa	Predicted RBP	10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	PLEKHA3	Q9HB20	300 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	SLC2A8	Q9NY64	477 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	CLEC2D	Q9UHP7	191 aa		10.78	□□□□□ -0.68
CHMP1A-210	ENST00000551981	FRAS1	Q86XX4	4008 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981		A0A0B4J203	849 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	AIRE	O43918	545 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	CEACAM6	P40199	344 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	RPS27A	P62979	156 aa	Known RBP	10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	ZNF343	Q6P1L6	599 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	ZNF880	Q6PDB4	577 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	LINC00322	Q6ZN03	302 aa	Predicted RBP	10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	C10orf67	Q8IYJ2	551 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	DRAXIN	Q8NBI3	349 aa	Predicted RBP	10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	BVES	Q8NE79	360 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	TMEM59	Q9BXS4	323 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	TINAGL1	Q9GZM7	467 aa	Predicted RBP	10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	RIMS4	Q9H426	269 aa	Predicted RBP	10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	ZNF221	Q9UK13	617 aa		10.77	□□□□□ -0.69
CHMP1A-210	ENST00000551981	PNMA8C	A0A1B0GUJ8	204 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	IZUMO1R	A6ND01	250 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	DYNC1I1	O14576	645 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	SNRPB	P14678	240 aa	Known RBP	10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	RNLS	Q5VYX0	342 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	ZNF383	Q8NA42	475 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	KCNG3	Q8TAE7	436 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	SNAPC3	Q92966	411 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	NEURL2	Q9BR09	285 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	COA4	Q9NYJ1	87 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	MGAT4A	Q9UM21	535 aa		10.76	□□□□□ -0.69
CHMP1A-210	ENST00000551981	OR10K2	Q6IF99	312 aa		10.75	□□□□□ -0.69
CHMP1A-210	ENST00000551981	PTX4	Q96A99	478 aa		10.75	□□□□□ -0.69
CHMP1A-210	ENST00000551981	PLEKHJ1	Q9NW61	149 aa		10.75	□□□□□ -0.69
CHMP1A-210	ENST00000551981	OR1A1	Q9P1Q5	309 aa		10.75	□□□□□ -0.69
CHMP1A-210	ENST00000551981	ADAM30	Q9UKF2	790 aa		10.75	□□□□□ -0.69
CHMP1A-210	ENST00000551981	TRBV6-6	A0A0A6YYG2	114 aa		10.74	□□□□□ -0.69
CHMP1A-210	ENST00000551981	TRBV12-3	P01733	135 aa		10.74	□□□□□ -0.69
CHMP1A-210	ENST00000551981	CD1A	P06126	327 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms