RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PDCD5O14737 125 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 IGLV1-40P01703 118 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 MC5RP33032 325 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 MRPS15P82914 257 aaKnown RBP12.72□□□□□ -0.37
VPS29-207ENST00000549970 DGCR2P98153 550 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 FHL3Q13643 280 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 MOGAT2Q3SYC2 334 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 ZNF491Q8N8L2 437 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 OR5AN1Q8NGI8 311 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 ABHD5Q8WTS1 349 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 UBE2E2Q96LR5 201 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 ZNF221Q9UK13 617 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 VSIG4Q9Y279 399 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 FBXO7Q9Y3I1 522 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 A3GALT2U3KPV4 340 aa12.72□□□□□ -0.37
VPS29-207ENST00000549970 A0A1W2PN81 502 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 SEC14L6B5MCN3 397 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 FCN1O00602 326 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 CD3GP09693 182 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 MYL9P24844 172 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 CHRNA7P36544 502 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 RAB9AP51151 201 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 LINC00205P59089 165 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 KIAA0141Q14154 515 aaPredicted RBP12.71□□□□□ -0.37
VPS29-207ENST00000549970 C9orf66Q5T8R8 295 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 ZNF660Q6AZW8 331 aaPredicted RBP12.71□□□□□ -0.37
VPS29-207ENST00000549970 PTX4Q96A99 478 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 RAB3CQ96E17 227 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 CLCC1Q96S66 551 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 NDUFB11Q9NX14 153 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 RDH8Q9NYR8 311 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 ZMAT5Q9UDW3 170 aaKnown RBP12.71□□□□□ -0.37
VPS29-207ENST00000549970 RAB26Q9ULW5 256 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 KCNK7Q9Y2U2 307 aa12.71□□□□□ -0.37
VPS29-207ENST00000549970 A0A075B6Q4 140 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 TRAV1-2A0A0B4J238 106 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 IFITM5A6NNB3 132 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 I3L521 148 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 PROP1O75360 226 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 RBBP9O75884 186 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 GNB1P62873 340 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 CX3CL1P78423 397 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 CD69Q07108 199 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 C11orf87Q6NUJ2 197 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 MINDY2Q8NBR6 621 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 OR1N2Q8NGR9 330 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 CASTOR1Q8WTX7 329 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 FAM103A1Q9BTL3 118 aaKnown RBP12.7□□□□□ -0.38
VPS29-207ENST00000549970 METTL1Q9UBP6 276 aaKnown RBP12.7□□□□□ -0.38
VPS29-207ENST00000549970 COL7A1Q02388 2944 aa12.7□□□□□ -0.38
VPS29-207ENST00000549970 A0A0B4J203 849 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 TRDV1A0A1B0GX56 115 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 BET1O15155 118 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 FABP7O15540 132 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 SOX15O60248 233 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 RAMP3O60896 148 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 IGKV1-16P04430 117 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 TFAP2AP05549 437 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 FCGR3AP08637 254 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 OR8U8P0C7N1 319 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 SNRPBP14678 240 aaKnown RBP12.69□□□□□ -0.38
VPS29-207ENST00000549970 GNB3P16520 340 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 RAB3BP20337 219 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 GADD45AP24522 165 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 RPS16P62249 146 aaKnown RBP12.69□□□□□ -0.38
VPS29-207ENST00000549970 ZNF616Q08AN1 781 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 ZNF260Q3ZCT1 412 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 ASPHD1Q5U4P2 390 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 C22orf42Q6IC83 251 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 CD200R1LQ6Q8B3 271 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 ZNF383Q8NA42 475 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 OR4A4PQ8NGN8 299 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 OR10R2Q8NGX6 335 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 MAFIPQ8WZ33 124 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 RNF5Q99942 180 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 GAB2Q9UQC2 676 aa12.69□□□□□ -0.38
VPS29-207ENST00000549970 FOXA2Q9Y261 457 aaPredicted RBP12.69□□□□□ -0.38
VPS29-207ENST00000549970 SMIM30A4D0T7 59 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 M0R1X1 148 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 CA2P00918 260 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 APOA2P02652 100 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 GSTT2P0CG29 244 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 GSTT2BP0CG30 244 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 EGR2P11161 476 aaPredicted RBP12.68□□□□□ -0.38
VPS29-207ENST00000549970 ECI1P42126 302 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 SERPINB10P48595 397 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 CRIP2P52943 208 aaPredicted RBP12.68□□□□□ -0.38
VPS29-207ENST00000549970 GABARAPL2P60520 117 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 RUNX1Q01196 453 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 TMEM267Q0VDI3 215 aaPredicted RBP12.68□□□□□ -0.38
VPS29-207ENST00000549970 DCTN2Q13561 401 aaKnown RBP12.68□□□□□ -0.38
VPS29-207ENST00000549970 PSG5Q15238 335 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 C19orf54Q5BKX5 351 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 IGSF11Q5DX21 431 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 VAX1Q5SQQ9 334 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 PDPNQ86YL7 162 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 PRR25Q96S07 402 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 TSNAXQ99598 290 aaKnown RBP12.68□□□□□ -0.38
VPS29-207ENST00000549970 B9D2Q9BPU9 175 aa12.68□□□□□ -0.38
VPS29-207ENST00000549970 ALX4Q9H161 411 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms