RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF833PQ6ZTB9 187 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 DHRSXQ8N5I4 330 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 SETD9Q8NE22 299 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 NPBQ8NG41 125 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 UBE2E2Q96LR5 201 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 SULT4A1Q9BR01 284 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 ZNF251Q9BRH9 671 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 CHCHD6Q9BRQ6 235 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 PARP11Q9NR21 331 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 VSIG4Q9Y279 399 aa6.57□□□□□ -1.36
USP28-215ENST00000545608 ZNF256Q9Y2P7 627 aaPredicted RBP6.57□□□□□ -1.36
USP28-215ENST00000545608 SAA2-SAA4A0A096LPE2 208 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 TRAV41A0A0B4J266 112 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 NBR2O15453 112 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 SOX15O60248 233 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 GNAO1P09471 354 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 SAA2P0DJI9 122 aaPredicted RBP6.56□□□□□ -1.36
USP28-215ENST00000545608 CHATP28329 748 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 BLVRBP30043 206 aaPredicted RBP6.56□□□□□ -1.36
USP28-215ENST00000545608 WNT4P56705 351 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 NDPQ00604 133 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 RUNX1Q01196 453 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 ZNF616Q08AN1 781 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 HMGN3Q15651 99 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 C5orf64Q2M2E5 130 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 LY6G6FQ5SQ64 297 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 FAM27D1Q5T7N8 215 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 TMEM65Q6PI78 240 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 AHSA2Q719I0 299 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 C6orf201Q7Z4U5 140 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 NANOGP1Q8N7R0 232 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 NKAIN3Q8N8D7 197 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 DCUN1D4Q92564 292 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 GALMQ96C23 342 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 UQCC2Q9BRT2 126 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 FAAP24Q9BTP7 215 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 ALX4Q9H161 411 aaPredicted RBP6.56□□□□□ -1.36
USP28-215ENST00000545608 IFI27L2Q9H2X8 130 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 KCNK15Q9H427 330 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 CNOT2Q9NZN8 540 aaKnown RBP6.56□□□□□ -1.36
USP28-215ENST00000545608 GHRLQ9UBU3 117 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 PSORS1C1Q9UIG5 152 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 DAPK2Q9UIK4 370 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 FBXO7Q9Y3I1 522 aa6.56□□□□□ -1.36
USP28-215ENST00000545608 KMT2CQ8NEZ4 4911 aaKnown RBP6.55□□□□□ -1.36
USP28-215ENST00000545608 H3BMQ9 156 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 FCN1O00602 326 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 MYL12BO14950 172 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 RGS11O94810 467 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 NDUFA3O95167 84 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 LY86O95711 162 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 OR8U8P0C7N1 319 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 CT45A6P0DMU7 189 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 CT45A5P0DMU8 189 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 CT45A7P0DMV0 189 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 EGR2P11161 476 aaPredicted RBP6.55□□□□□ -1.36
USP28-215ENST00000545608 HTR2CP28335 458 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 INSL3P51460 131 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 RPS27AP62979 156 aaKnown RBP6.55□□□□□ -1.36
USP28-215ENST00000545608 CX3CL1P78423 397 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 ACSM3Q53FZ2 586 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 RPL39P5Q59GN2 51 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 C19orf54Q5BKX5 351 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 C1orf100Q5SVJ3 147 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 GPR107Q5VW38 600 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 GLDNQ6ZMI3 551 aaPredicted RBP6.55□□□□□ -1.36
USP28-215ENST00000545608 LRRTM1Q86UE6 522 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 BPIFB6Q8NFQ5 453 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 CASTOR1Q8WTX7 329 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 IL1F10Q8WWZ1 152 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 DLX4Q92988 240 aaPredicted RBP6.55□□□□□ -1.36
USP28-215ENST00000545608 C16orf92Q96LL3 132 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 NEDD4LQ96PU5 975 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 NEURL2Q9BR09 285 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 NICN1Q9BSH3 213 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 DCUN1D5Q9BTE7 237 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 PARP12Q9H0J9 701 aaKnown RBP6.55□□□□□ -1.36
USP28-215ENST00000545608 CST11Q9H112 138 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 FBXL15Q9H469 300 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 PLCXD1Q9NUJ7 323 aa6.55□□□□□ -1.36
USP28-215ENST00000545608 A0A0A6YYD4 124 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 A0A1W2PN81 502 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 NOTOA8MTQ0 251 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 RRHO14718 337 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 OVOL1O14753 267 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 SLC22A1O15245 554 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 NAPSAO96009 420 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 GSTT2P0CG29 244 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 GSTT2BP0CG30 244 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 UBBP0CG47 229 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 CD37P11049 281 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 MAPK3P27361 379 aaPredicted RBP6.54□□□□□ -1.36
USP28-215ENST00000545608 CHRNA7P36544 502 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 CRIP2P52943 208 aaPredicted RBP6.54□□□□□ -1.36
USP28-215ENST00000545608 SLURP1P55000 103 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 QRFPP83859 136 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 UNC119Q13432 240 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 KIR3DS1Q14943 382 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 ECSCRQ19T08 205 aa6.54□□□□□ -1.36
USP28-215ENST00000545608 RBM48Q5RL73 367 aaKnown RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 132.7 ms