RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PRELID3BQ9Y3B1 194 aa14.16□□□□□ -0.14
USP28-208ENST00000540438 TRAV17A0A0B4J275 112 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 PRB3Q04118 309 aaPredicted RBP14.15□□□□□ -0.14
USP28-208ENST00000540438 HABP2Q14520 560 aaPredicted RBP14.15□□□□□ -0.14
USP28-208ENST00000540438 ATP5SQ99766 215 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 SMCO4Q9NRQ5 59 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 IFNA5P01569 189 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 ACP7Q6ZNF0 438 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 SLC16A13Q7RTY0 426 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 SCGB1C1Q8TD33 95 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 RBKSQ9H477 322 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 SLC25A22Q9H936 323 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 GNG12Q9UBI6 72 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 PROCRQ9UNN8 238 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 KPTNQ9Y664 436 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 HCFC1P51610 2035 aa14.15□□□□□ -0.14
USP28-208ENST00000540438 MYOD1P15172 320 aa14.15□□□□□ -0.15
USP28-208ENST00000540438 RIMS4Q9H426 269 aaPredicted RBP14.15□□□□□ -0.15
USP28-208ENST00000540438 IQCF6A8MYZ5 107 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 H3BQ15 152 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 NQO2P16083 231 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 RAB2AP61019 212 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 ZNF726P1Q15940 193 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 PDZD11Q5EBL8 140 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 LYPD6BQ8NI32 183 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 TMEM30CPA0ZSE6 113 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 TAGLN2P37802 199 aaKnown RBP14.14□□□□□ -0.15
USP28-208ENST00000540438 UBE2KP61086 200 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 ZNF146Q15072 292 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 NCR3LG1Q68D85 454 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 ZNF880Q6PDB4 577 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 ZNF474Q6S9Z5 364 aaPredicted RBP14.14□□□□□ -0.15
USP28-208ENST00000540438 Q6ZS49 121 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 RAB39BQ96DA2 213 aa14.14□□□□□ -0.15
USP28-208ENST00000540438 ODAMA1E959 279 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 FCGR3BO75015 233 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 RD3LP0DJH9 198 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 MMP9P14780 707 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 FLI1Q01543 452 aaPredicted RBP14.13□□□□□ -0.15
USP28-208ENST00000540438 GCSAMLQ5JQS6 135 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 NCMAPQ5T1S8 102 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 INO80CQ6PI98 192 aaPredicted RBP14.13□□□□□ -0.15
USP28-208ENST00000540438 PIP4P1Q86T03 277 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 SARAFQ96BY9 339 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 OR2V2Q96R30 315 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 TMEM204Q9BSN7 226 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 CABLES2Q9BTV7 478 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 IGKV1D-33P01593 117 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 IGKV1-33P01594 117 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 IGKV3-15P01624 115 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 RPS10P46783 165 aaKnown RBP14.13□□□□□ -0.15
USP28-208ENST00000540438 TFF3Q07654 80 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 ZNF718Q3SXZ3 478 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 C4orf17Q53FE4 359 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 C12orf57Q99622 126 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 PBDC1Q9BVG4 233 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 HINT2Q9BX68 163 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 OPA3Q9H6K4 179 aa14.13□□□□□ -0.15
USP28-208ENST00000540438 SMCO3A2RU48 225 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 KIAA0141Q14154 515 aaPredicted RBP14.12□□□□□ -0.15
USP28-208ENST00000540438 ICAM4Q14773 271 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 BHLHA15Q7RTS1 189 aaPredicted RBP14.12□□□□□ -0.15
USP28-208ENST00000540438 TRAV3A0A0B4J244 114 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 CEBPZOSA8MTT3 80 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.12□□□□□ -0.15
USP28-208ENST00000540438 LINC00518Q8N0U6 118 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 NECAP1Q8NC96 275 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 SDSLQ96GA7 329 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 NUDT19A8MXV4 375 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 SLC31A2O15432 143 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 OR2C1O95371 312 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 CYB5R3P00387 301 aaPredicted RBP14.12□□□□□ -0.15
USP28-208ENST00000540438 S100A6P06703 90 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 PRDX2P32119 198 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 GNG10P50151 68 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 TAS2R30P59541 319 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 C1orf229Q6ZS94 237 aaPredicted RBP14.12□□□□□ -0.15
USP28-208ENST00000540438 ZNF429Q86V71 674 aa14.12□□□□□ -0.15
USP28-208ENST00000540438 A0A1B0GU03 582 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 PRR33A8MZF0 331 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 ZNF134P52741 427 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 DLK1P80370 383 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 ZNF525Q8N782 197 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 ITLN1Q8WWA0 313 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 PROP1O75360 226 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 SCAF4O95104 1147 aaKnown RBP14.11□□□□□ -0.15
USP28-208ENST00000540438 IGHG3P01860 377 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 PTAFRP25105 342 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 RPS23P62266 143 aaKnown RBP14.11□□□□□ -0.15
USP28-208ENST00000540438 SLC38A11Q08AI6 406 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 ZNF787Q6DD87 383 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 SSX3Q99909 188 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 CXXC4Q9H2H0 198 aa14.11□□□□□ -0.15
USP28-208ENST00000540438 LIN7CQ9NUP9 197 aaKnown RBP14.11□□□□□ -0.15
USP28-208ENST00000540438 STRAPQ9Y3F4 350 aaKnown RBP14.11□□□□□ -0.15
USP28-208ENST00000540438 IGKV1D-17A0A075B6S4 117 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 TGIF2-C20orf24A0A0A6YYL0 155 aa14.1□□□□□ -0.15
USP28-208ENST00000540438 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.1□□□□□ -0.15
USP28-208ENST00000540438 GALR2O43603 387 aaPredicted RBP14.1□□□□□ -0.15
USP28-208ENST00000540438 IFNA17P01571 189 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms