RNA–Protein interactions for RNA: ENST00000539721.5

TRAF3-204, Transcript of TNF receptor associated factor 3, humanhuman

TSL 2 BASIC

Gene TRAF3, Length 1,786 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-204ENST00000539721 ZNF66Q6ZN08 573 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 TNFRSF14Q92956 283 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 S1PR3Q99500 378 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 HEXA-AS1Q9H8Q6 139 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 LIN7CQ9NUP9 197 aaKnown RBP13.18□□□□□ -0.3
TRAF3-204ENST00000539721 INSIG2Q9Y5U4 225 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 VPS13CQ709C8 3753 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 UNC79Q9P2D8 2635 aa13.18□□□□□ -0.3
TRAF3-204ENST00000539721 B4DSR2 109 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 H0Y980 276 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 TOX4O94842 621 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 MSMBP08118 114 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 EIF4EBP1Q13541 118 aaPredicted RBP13.17□□□□□ -0.3
TRAF3-204ENST00000539721 TCTEX1D2Q8WW35 142 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 HSD17B10Q99714 261 aaKnown RBP13.17□□□□□ -0.3
TRAF3-204ENST00000539721 PCGF1Q9BSM1 259 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 MGAT4CQ9UBM8 478 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 HECTD1Q9ULT8 2610 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 A0A0B4J2A0 478 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 PROP1O75360 226 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 SULT1A3P0DMM9 295 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 SULT1A4P0DMN0 295 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 IL3RAP26951 378 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 RPL30P62888 115 aaKnown RBP13.17□□□□□ -0.3
TRAF3-204ENST00000539721 KLRD1Q13241 179 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 LIAT1Q6ZQX7 453 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 C1orf229Q6ZS94 237 aaPredicted RBP13.17□□□□□ -0.3
TRAF3-204ENST00000539721 AKAP14Q86UN6 197 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 OR11H7Q8NGC8 314 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 GLYATL2Q8WU03 294 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 C1orf159Q96HA4 380 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 TMEM222Q9H0R3 208 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 SHPKQ9UHJ6 478 aa13.17□□□□□ -0.3
TRAF3-204ENST00000539721 GOSR2O14653 212 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 B3GALNT1O75752 331 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 MMP9P14780 707 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 DUTP33316 252 aaKnown RBP13.16□□□□□ -0.3
TRAF3-204ENST00000539721 HLA-DRB5Q30154 266 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 MAPK1IP1LQ8NDC0 245 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 BEND2Q8NDZ0 799 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 FOXC2Q99958 501 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 ZNF251Q9BRH9 671 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 UNKLQ9H9P5 680 aaKnown RBP13.16□□□□□ -0.3
TRAF3-204ENST00000539721 MED13LQ71F56 2210 aa13.16□□□□□ -0.3
TRAF3-204ENST00000539721 LINC00473A8K010 186 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 IGLV1-47P01700 117 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 ARG1P05089 322 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 HOXB4P17483 251 aaPredicted RBP13.15□□□□□ -0.3
TRAF3-204ENST00000539721 CXCL3P19876 107 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 UCP1P25874 307 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 SRPXP78539 464 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 C2orf68Q2NKX9 166 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 ZNF833PQ6ZTB9 187 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 LGI3Q8N145 548 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 LINC01356Q8N9X3 169 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 DRAXINQ8NBI3 349 aaPredicted RBP13.15□□□□□ -0.3
TRAF3-204ENST00000539721 TMEM186Q96B77 213 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 MSI2Q96DH6 328 aaKnown RBP13.15□□□□□ -0.3
TRAF3-204ENST00000539721 TBX15Q96SF7 602 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 AMMECR1Q9Y4X0 333 aaPredicted RBP13.15□□□□□ -0.3
TRAF3-204ENST00000539721 CR1P17927 2039 aa13.15□□□□□ -0.3
TRAF3-204ENST00000539721 ASH1LQ9NR48 2969 aaKnown RBP13.15□□□□□ -0.3
TRAF3-204ENST00000539721 DBX1A6NMT0 343 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 A8MV72 311 aaPredicted RBP13.15□□□□□ -0.31
TRAF3-204ENST00000539721 CCNKO75909 580 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 LINC00205P59089 165 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 PAX8Q06710 450 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 OR2B11Q5JQS5 317 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 DCAF12L2Q5VW00 463 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 NCR3LG1Q68D85 454 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 HCP5Q6MZN7 132 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 PDZD9Q8IXQ8 264 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 OR11H6Q8NGC7 330 aa13.15□□□□□ -0.31
TRAF3-204ENST00000539721 WNK2Q9Y3S1 2297 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 TRAV20A0A0B4J274 112 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 RNASEK-C17orf49H0YIS7 233 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 CCSO14618 274 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 SERPINE2P07093 398 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 THBS3P49746 956 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 ZNF137PP52743 207 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 CD83Q01151 205 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 TMEM268Q5VZI3 342 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 FAM71F2Q6NXP2 309 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 ZNF695Q8IW36 515 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 TCTEX1D1Q8N7M0 179 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 LRTM2Q8N967 370 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 WFDC11Q8NEX6 87 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 OR4P4Q8NGL7 312 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 LHFPL5Q8TAF8 219 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 NEURL2Q9BR09 285 aa13.14□□□□□ -0.31
TRAF3-204ENST00000539721 BUB1B-PAK6H3BSN5 160 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 ADAP1O75689 374 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 SIX6O95475 246 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 CDS2O95674 445 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 HOXB5P09067 269 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 SPAG16Q8N0X2 631 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 LHX4Q969G2 390 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 ADTRPQ96IZ2 230 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 TMEM56Q96MV1 263 aa13.13□□□□□ -0.31
TRAF3-204ENST00000539721 RAB18Q9NP72 206 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms