RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 CA2P00918 260 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 TRGV3P03979 118 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 RPS27AP62979 156 aaKnown RBP10.38□□□□□ -0.75
SS18-204ENST00000539244 ST3GAL4Q11206 333 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 PSG5Q15238 335 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 MOGAT2Q3SYC2 334 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 MOB1BQ7L9L4 216 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 C6orf201Q7Z4U5 140 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 GGHQ92820 318 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 ABHD14BQ96IU4 210 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 FAAP24Q9BTP7 215 aa10.38□□□□□ -0.75
SS18-204ENST00000539244 PARP12Q9H0J9 701 aaKnown RBP10.38□□□□□ -0.75
SS18-204ENST00000539244 METTL1Q9UBP6 276 aaKnown RBP10.38□□□□□ -0.75
SS18-204ENST00000539244 PNMA8CA0A1B0GUJ8 204 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 H7C2Y5 167 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 PROP1O75360 226 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 BRI3O95415 125 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 CELP19835 753 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 HTR2CP28335 458 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 KLF5Q13887 457 aaPredicted RBP10.37□□□□□ -0.75
SS18-204ENST00000539244 C1orf100Q5SVJ3 147 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 POC5Q8NA72 575 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 EDARADDQ8WWZ3 215 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 PTX4Q96A99 478 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 TSNAXQ99598 290 aaKnown RBP10.37□□□□□ -0.75
SS18-204ENST00000539244 THAP7Q9BT49 309 aaPredicted RBP10.37□□□□□ -0.75
SS18-204ENST00000539244 RSRP1Q9BUV0 290 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 TMEM59Q9BXS4 323 aa10.37□□□□□ -0.75
SS18-204ENST00000539244 C11orf54Q9H0W9 315 aaPredicted RBP10.37□□□□□ -0.75
SS18-204ENST00000539244 RIMS4Q9H426 269 aaPredicted RBP10.37□□□□□ -0.75
SS18-204ENST00000539244 A0A0G2JLM5 398 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 H0Y980 276 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 IGKV1-16P04430 117 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 CD37P11049 281 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 SNRPBP14678 240 aaKnown RBP10.36□□□□□ -0.75
SS18-204ENST00000539244 ARSBP15848 533 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 ZBTB25P24278 435 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 WNT4P56705 351 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 SSBP2P81877 361 aaPredicted RBP10.36□□□□□ -0.75
SS18-204ENST00000539244 UNC119Q13432 240 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 HAGHQ16775 308 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 TTC23Q5W5X9 447 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 OR10K2Q6IF99 312 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 IL34Q6ZMJ4 242 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 ADAMTSL5Q6ZMM2 481 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 ZNF383Q8NA42 475 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 SETD9Q8NE22 299 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 OR9G4Q8NGQ1 327 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 KCNG3Q8TAE7 436 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 CLCC1Q96S66 551 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 NICN1Q9BSH3 213 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 SIGLEC8Q9NYZ4 499 aa10.36□□□□□ -0.75
SS18-204ENST00000539244 NKX1-2Q9UD57 310 aaPredicted RBP10.36□□□□□ -0.75
SS18-204ENST00000539244 HYDINQ4G0P3 5121 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 C13orf42A0A1B0GVH6 325 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 TMEM14DPA8MWL7 114 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 CPEP16870 476 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 HLA-DRB3P79483 266 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 QRFPP83859 136 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 FXYD3Q14802 87 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 GLT8D1Q68CQ7 371 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 LRRTM1Q86UE6 522 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 PDPNQ86YL7 162 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 PHYHIPQ92561 330 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 TMEM68Q96MH6 324 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 CHMP1AQ9HD42 196 aaPredicted RBP10.35□□□□□ -0.75
SS18-204ENST00000539244 PLEKHJ1Q9NW61 149 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 MGAT4AQ9UM21 535 aa10.35□□□□□ -0.75
SS18-204ENST00000539244 A0A0A6YYD4 124 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 MYL12BO14950 172 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 IFNA6P05013 189 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 CEACAM6P40199 344 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 RPS16P62249 146 aaKnown RBP10.34□□□□□ -0.75
SS18-204ENST00000539244 NANOGP1Q8N7R0 232 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 DRAXINQ8NBI3 349 aaPredicted RBP10.34□□□□□ -0.75
SS18-204ENST00000539244 GRPEL2Q8TAA5 225 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 OR1A1Q9P1Q5 309 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 PSORS1C1Q9UIG5 152 aa10.34□□□□□ -0.75
SS18-204ENST00000539244 SLC25A17O43808 307 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 BPNT1O95861 308 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 IGLV2-23P01705 113 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 APOA2P02652 100 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 CRYGBP07316 175 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 AADACP22760 399 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 LINC00205P59089 165 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 INSL4Q14641 139 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 ACSM3Q53FZ2 586 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 LAIR2Q6ISS4 152 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 LCN12Q6JVE5 192 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 ZNF343Q6P1L6 599 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 GTSCR1Q86UQ5 136 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 Q8N402 240 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 FAM89BQ8N5H3 189 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 MS4A15Q8N5U1 240 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.33□□□□□ -0.76
SS18-204ENST00000539244 OR5T1Q8NG75 326 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 SETD6Q8TBK2 473 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 CYGBQ8WWM9 190 aa10.33□□□□□ -0.76
SS18-204ENST00000539244 HDHD3Q9BSH5 251 aaPredicted RBP10.33□□□□□ -0.76
SS18-204ENST00000539244 KCNK15Q9H427 330 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms