RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 PSORS1C2Q9UIG4 136 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 HDGFL3Q9Y3E1 203 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 ZNF337Q9Y3M9 751 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 CRB1P82279 1406 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 SETD2Q9BYW2 2564 aaPredicted RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 ARHGAP32A7KAX9 2087 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 HELZ2Q9BYK8 2649 aaKnown RBP1.19□□□□□ -2.22
CD44-238ENST00000534296 OTOFQ9HC10 1997 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 RAD50Q92878 1312 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 ANKRD11Q6UB99 2663 aaPredicted RBP1.19□□□□□ -2.22
CD44-238ENST00000534296 A0A0C4DFX4 3053 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 IGKV1-12A0A0C4DH73 117 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 TEX50A0A1B0GTY4 177 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 C5orf49A4QMS7 147 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 MRASO14807 208 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 DSCAMO60469 2012 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 HPGDSO60760 199 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 SOD1P00441 154 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 IGKV1D-12P01611 117 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 OCM2P0CE71 109 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 IGHV3-30-3P0DP02 117 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 HIST1H1CP16403 213 aaKnown RBP1.19□□□□□ -2.22
CD44-238ENST00000534296 UGT2B7P16662 529 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 ALOX5APP20292 161 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 NPPCP23582 126 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 OPRM1P35372 400 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 FUSP35637 526 aaKnown RBP eCLIP1.19□□□□□ -2.22
CD44-238ENST00000534296 CD79BP40259 229 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 CDC34P49427 236 aaPredicted RBP1.19□□□□□ -2.22
CD44-238ENST00000534296 DMTNQ08495 405 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 MYO9BQ13459 2157 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 EBPQ15125 230 aaKnown RBP1.19□□□□□ -2.22
CD44-238ENST00000534296 KRTAP21-2Q3LI59 83 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 TMEM31Q5JXX7 168 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 Q6ZS52 159 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 GLT6D1Q7Z4J2 308 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 BAP18Q8IXM2 172 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 YIPF7Q8N8F6 280 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 Q8NDZ9 215 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 FNDC9Q8TBE3 224 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 DNAJB3Q8WWF6 145 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 TMBIM1Q969X1 311 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 PACRGQ96M98 296 aaPredicted RBP1.19□□□□□ -2.22
CD44-238ENST00000534296 HDHD2Q9H0R4 259 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 MINOS1-NBL1R4GNA1 71 aa1.19□□□□□ -2.22
CD44-238ENST00000534296 FBN1P35555 2871 aaKnown RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 TRPM3Q9HCF6 1732 aaPredicted RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 IGHV3-15A0A0B4J1V0 119 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 C1orf232A0A0U1RR37 186 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 SIGLEC16A6NMB1 481 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 H3BRN7 92 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 SLC17A3O00476 420 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 PFDN6O15212 129 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 GPX1P07203 203 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 CRHBPP24387 322 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 GABRA4P48169 554 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 PSMD8P48556 350 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 TMEM33P57088 247 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 TSPEAR-AS2P59090 65 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 AP1S1P61966 158 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 HERVK_113P63121 156 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 HPCAP84074 193 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 ERHP84090 104 aaKnown RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 HOXC5Q00444 222 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 PRDX4Q13162 271 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 GNA13Q14344 377 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 N4BP2L1Q5TBK1 243 aaPredicted RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 OGFRL1Q5TC84 451 aaPredicted RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 DNM1P34Q6PK57 102 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 AGTRAPQ6RW13 159 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 HIST2H3AQ71DI3 136 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 CD302Q8IX05 232 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 SLC35F6Q8N357 371 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 C10orf126Q8N4M7 172 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 OR13C8Q8NGS7 320 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 OR5J2Q8NH18 312 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 FGF13Q92913 245 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 PPCDCQ96CD2 204 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 OR52B2Q96RD2 323 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 KLF6Q99612 283 aaPredicted RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 ZNF426Q9BUY5 554 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 TTTY12Q9BZ98 90 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 NSRP1Q9H0G5 558 aaKnown RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 WDR54Q9H977 334 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 HES4Q9HCC6 221 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 FGFR1OP2Q9NVK5 253 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 USE1Q9NZ43 259 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 EMC3Q9P0I2 261 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 TAAR3PQ9P1P4 343 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 CCL26Q9Y258 94 aa1.18□□□□□ -2.22
CD44-238ENST00000534296 ANKRD17O75179 2603 aaKnown RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 FLNBO75369 2602 aaKnown RBP1.18□□□□□ -2.22
CD44-238ENST00000534296 CLUHO75153 1309 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 COL18A1P39060 1754 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 FABP12A6NFH5 140 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 ODF3BA8MYP8 253 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 GOLGA8KD6RF30 607 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 GOLGA8MH3BSY2 632 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 J3QQQ9 107 aa1.17□□□□□ -2.22
CD44-238ENST00000534296 ATP8B1O43520 1251 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms