RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 C7orf50Q9BRJ6 194 aaKnown RBP12.02□□□□□ -0.49
CPSF1-208ENST00000532560 PRSS22Q9GZN4 317 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 EXTL2Q9UBQ6 330 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 SIGLEC9Q9Y336 463 aa12.02□□□□□ -0.49
CPSF1-208ENST00000532560 FAM240BA0A1B0GVZ2 78 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 CENPXA8MT69 81 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 TPPPO94811 219 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 DIRAS3O95661 229 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 GSTP1P09211 210 aaKnown RBP12.01□□□□□ -0.49
CPSF1-208ENST00000532560 SCTP09683 121 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 DTYMKP23919 212 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 ZBTB25P24278 435 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 EBI3Q14213 229 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 KIR2DS1Q14954 304 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 SRSF7Q16629 238 aaKnown RBP eCLIP12.01□□□□□ -0.49
CPSF1-208ENST00000532560 CDNFQ49AH0 187 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 MOB3BQ86TA1 216 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 ODF3L1Q8IXM7 274 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 OR4A4PQ8NGN8 299 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 OR5H6Q8NGV6 325 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 SGMS2Q8NHU3 365 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 CABLES2Q9BTV7 478 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 IFI27L2Q9H2X8 130 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 OR1A1Q9P1Q5 309 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 SLC23A1Q9UHI7 598 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 SPATA2Q9UM82 520 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 MOB4Q9Y3A3 225 aa12.01□□□□□ -0.49
CPSF1-208ENST00000532560 A0A0A6YYH2 397 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 IGKV1-6A0A0C4DH72 117 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 A6NJ64 397 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 FABP7O15540 132 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 IGKV1D-33P01593 117 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 IGKV1-33P01594 117 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 TMEM11P17152 192 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 ELK1P19419 428 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 CD1BP29016 333 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 KRTAP10-3P60369 221 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 BLCAPP62952 87 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 ARFRP1Q13795 201 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 HES1Q14469 280 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 HERPUD1Q15011 391 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 FAM71F2Q6NXP2 309 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 Q6ZS49 121 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 ZNF833PQ6ZTB9 187 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 TCTE3Q8IZS6 198 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 C15orf40Q8WUR7 153 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 EDARADDQ8WWZ3 215 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 ST6GAL2Q96JF0 529 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 MARVELD1Q9BSK0 173 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 SERTAD4Q9NUC0 356 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 COPZ2Q9P299 210 aa12□□□□□ -0.49
CPSF1-208ENST00000532560 SAA2-SAA4A0A096LPE2 208 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 IGHV3-72A0A0B4J1Y9 119 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 TMEM235A6NFC5 223 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 CTDSPLO15194 276 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 ST8SIA5O15466 376 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 HSPA12AO43301 675 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 AMY1AP04745 511 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 AMY2AP04746 511 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 SAA2P0DJI9 122 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-208ENST00000532560 SRSF4Q08170 494 aaKnown RBP11.99□□□□□ -0.49
CPSF1-208ENST00000532560 ZNF260Q3ZCT1 412 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 Q8N6K4 173 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 KLHDC1Q8N7A1 406 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 PHF21AQ96BD5 680 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 AGMATQ9BSE5 352 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 TOLLIPQ9H0E2 274 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 PARP12Q9H0J9 701 aaKnown RBP11.99□□□□□ -0.49
CPSF1-208ENST00000532560 PIPOXQ9P0Z9 390 aa11.99□□□□□ -0.49
CPSF1-208ENST00000532560 ZNF230Q9UIE0 474 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-208ENST00000532560 ELF5Q9UKW6 265 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-208ENST00000532560 FGF16O43320 207 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 S100A1P23297 94 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 CEACAM6P40199 344 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 PNLIPRP3Q17RR3 467 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 ABCA11PQ4W5N1 156 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 Q6ZS46 218 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 SAMD12Q8N8I0 201 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 OR2T10Q8NGZ9 312 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 MAFIPQ8WZ33 124 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 EAF1Q96JC9 268 aaPredicted RBP11.98□□□□□ -0.49
CPSF1-208ENST00000532560 MRPL20Q9BYC9 149 aaKnown RBP11.98□□□□□ -0.49
CPSF1-208ENST00000532560 ABCG5Q9H222 651 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 GHITMQ9H3K2 345 aa11.98□□□□□ -0.49
CPSF1-208ENST00000532560 RAB29O14966 203 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 GSTZ1O43708 216 aaPredicted RBP11.97□□□□□ -0.49
CPSF1-208ENST00000532560 MOSP00540 346 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 GSTT2P0CG29 244 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 GSTT2BP0CG30 244 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 VDAC2P45880 294 aaPredicted RBP11.97□□□□□ -0.49
CPSF1-208ENST00000532560 OR3A3P47888 321 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 GNG2P59768 71 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 HNF4GQ14541 408 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 IGSF11Q5DX21 431 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 ARSJQ5FYB0 599 aaPredicted RBP11.97□□□□□ -0.49
CPSF1-208ENST00000532560 UBE2NLQ5JXB2 153 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 ZNF57Q68EA5 555 aaPredicted RBP11.97□□□□□ -0.49
CPSF1-208ENST00000532560 C5orf56Q8N8D9 126 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 NUDCD2Q8WVJ2 157 aa11.97□□□□□ -0.49
CPSF1-208ENST00000532560 S1PR3Q99500 378 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms