RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ITGB1BP1O14713 200 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 RBBP9O75884 186 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 BPNT1O95861 308 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 CD37P11049 281 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 SPNP16150 400 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 CPEP16870 476 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 MYL9P24844 172 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 CALRP27797 417 aaKnown RBP8.76□□□□□ -1.01
VPS28-214ENST00000531032 MC5RP33032 325 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 QRFPP83859 136 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 TPBGQ13641 420 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 P2RY14Q15391 338 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 PYHIN1Q6K0P9 492 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 ACSM6Q6P461 480 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 CD200R1LQ6Q8B3 271 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 MOB1BQ7L9L4 216 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 OR5AN1Q8NGI8 311 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 MUC7Q8TAX7 377 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 SETD6Q8TBK2 473 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 RCHY1Q96PM5 261 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 AGMATQ9BSE5 352 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 NICN1Q9BSH3 213 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 PARP12Q9H0J9 701 aaKnown RBP8.76□□□□□ -1.01
VPS28-214ENST00000531032 GHITMQ9H3K2 345 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 KCNK15Q9H427 330 aa8.76□□□□□ -1.01
VPS28-214ENST00000531032 IGHV4OR15-8A0A075B7B6 117 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 A0A087WW49 117 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 TMEM14DPA8MWL7 114 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 FCN1O00602 326 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 SLC22A1O15245 554 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 OR8U9P0C7N5 309 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 FRMD6-AS1P0C7T7 363 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 GP9P14770 177 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 ARSBP15848 533 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 TMEM267Q0VDI3 215 aaPredicted RBP8.75□□□□□ -1.01
VPS28-214ENST00000531032 PLGLAQ15195 96 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 AKIRIN2Q53H80 203 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 CASC10Q5T4H9 136 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 GLDNQ6ZMI3 551 aaPredicted RBP8.75□□□□□ -1.01
VPS28-214ENST00000531032 OR6Q1Q8NGQ2 317 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 CASTOR1Q8WTX7 329 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 ARPC1AQ92747 370 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 ABHD14BQ96IU4 210 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 RNF5Q99942 180 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 RIMS4Q9H426 269 aaPredicted RBP8.75□□□□□ -1.01
VPS28-214ENST00000531032 ACOT13Q9NPJ3 140 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 PLEKHJ1Q9NW61 149 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 RNF150Q9ULK6 438 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 GAB2Q9UQC2 676 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 WASHC3Q9Y3C0 194 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 AK6Q9Y3D8 172 aaKnown RBP8.75□□□□□ -1.01
VPS28-214ENST00000531032 A3GALT2U3KPV4 340 aa8.75□□□□□ -1.01
VPS28-214ENST00000531032 HUWE1Q7Z6Z7 4374 aaKnown RBP8.74□□□□□ -1.01
VPS28-214ENST00000531032 A0A0A6YYD4 124 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 SLC17A2O00624 439 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 PDCD5O14737 125 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 HSPB1P04792 205 aaKnown RBP8.74□□□□□ -1.01
VPS28-214ENST00000531032 GSTP1P09211 210 aaKnown RBP8.74□□□□□ -1.01
VPS28-214ENST00000531032 GABARAPL2P60520 117 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 FABP5Q01469 135 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 ACTBL2Q562R1 376 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 ZNF562Q6V9R5 426 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 OVCH2Q7RTZ1 564 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 PPP1R27Q86WC6 154 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 ABHD5Q8WTS1 349 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 EDARADDQ8WWZ3 215 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 FLYWCH2Q96CP2 140 aaKnown RBP8.74□□□□□ -1.01
VPS28-214ENST00000531032 FAM103A1Q9BTL3 118 aaKnown RBP8.74□□□□□ -1.01
VPS28-214ENST00000531032 OR1A1Q9P1Q5 309 aa8.74□□□□□ -1.01
VPS28-214ENST00000531032 TRIM64CA6NLI5 447 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 H7C2Y5 167 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 ARPC1BO15143 372 aaKnown RBP8.73□□□□□ -1.01
VPS28-214ENST00000531032 PROP1O75360 226 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 SPDEFO95238 335 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 IGHV3-11P01762 117 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 IGKV1-16P04430 117 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 TFAP2AP05549 437 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 ZBTB25P24278 435 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 PSMB9P28065 219 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 PSMD7P51665 324 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 TPPP2P59282 170 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 HLA-DRB3P79483 266 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 MRPS15P82914 257 aaKnown RBP8.73□□□□□ -1.01
VPS28-214ENST00000531032 PITPNAQ00169 270 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 PSG5Q15238 335 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 UNQ5815/PRO19632Q6UWF5 114 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 TMEM91Q6ZNR0 172 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 FAM89BQ8N5H3 189 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 PTX4Q96A99 478 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 RHOVQ96L33 236 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 HDHD3Q9BSH5 251 aaPredicted RBP8.73□□□□□ -1.01
VPS28-214ENST00000531032 C11orf54Q9H0W9 315 aaPredicted RBP8.73□□□□□ -1.01
VPS28-214ENST00000531032 LPAR5Q9H1C0 372 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 SLA2Q9H6Q3 261 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 METTL1Q9UBP6 276 aaKnown RBP8.73□□□□□ -1.01
VPS28-214ENST00000531032 AK3Q9UIJ7 227 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 MGAT4AQ9UM21 535 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 V9GY05 133 aa8.73□□□□□ -1.01
VPS28-214ENST00000531032 DNAH7Q8WXX0 4024 aa8.72□□□□□ -1.01
VPS28-214ENST00000531032 FOXI3A8MTJ6 420 aaPredicted RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms