RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RDH8Q9NYR8 311 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 ANXA10Q9UJ72 324 aa8.11□□□□□ -1.11
VPS28-204ENST00000526054 IGKV1D-8A0A087WSZ0 117 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 SAA2-SAA4A0A096LPE2 208 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 IGHV1-3A0A0C4DH29 117 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 A6NDX4 124 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 FABP12A6NFH5 140 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 RAB29O14966 203 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 TPPPO94811 219 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 PRB2P02812 416 aaPredicted RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 FAM106CPP0CH98 169 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 SAA2P0DJI9 122 aaPredicted RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 REG1BP48304 166 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 DIAPH2-AS1Q14236 149 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 FBLN7Q53RD9 439 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 C16orf82Q7Z2V1 217 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 REC114Q7Z4M0 266 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 SNX29P2Q8IUI4 249 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 DRAM1Q8N682 238 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 OR56B4Q8NH76 319 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 PIFOQ8TCI5 191 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 CAPSLQ8WWF8 208 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 RTN4IP1Q8WWV3 396 aaPredicted RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 AKR1E2Q96JD6 320 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 S1PR3Q99500 378 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 PARP12Q9H0J9 701 aaKnown RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 C11orf54Q9H0W9 315 aaPredicted RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 ZNF702PQ9H963 129 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 SCPEP1Q9HB40 452 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 RABL2AQ9UBK7 228 aaPredicted RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 ZNF221Q9UK13 617 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 RABL2BQ9UNT1 228 aa8.1□□□□□ -1.11
VPS28-204ENST00000526054 RBM7Q9Y580 266 aaKnown RBP8.1□□□□□ -1.11
VPS28-204ENST00000526054 MEIS3P1A6NDR6 274 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 SULT1C2O00338 296 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 PEX14O75381 377 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 HLA-DQB1P01920 261 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 SNRNP70P08621 437 aaKnown RBP8.09□□□□□ -1.11
VPS28-204ENST00000526054 PTBP1P26599 531 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS28-204ENST00000526054 GPR12P47775 334 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 TAS2R46P59540 309 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 HES1Q14469 280 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 HABP2Q14520 560 aaPredicted RBP8.09□□□□□ -1.11
VPS28-204ENST00000526054 NSUN5P1Q3KNT7 163 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 ARSJQ5FYB0 599 aaPredicted RBP8.09□□□□□ -1.11
VPS28-204ENST00000526054 FAM131AQ6UXB0 335 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 ZNF833PQ6ZTB9 187 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 TMEM219Q86XT9 240 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 THNSL2Q86YJ6 484 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 ODF3L1Q8IXM7 274 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 H1FOOQ8IZA3 346 aaPredicted RBP8.09□□□□□ -1.11
VPS28-204ENST00000526054 MFSD4AQ8N468 514 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 GVQW1Q8N7I0 195 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 ABHD14BQ96IU4 210 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 SERTAD4Q9NUC0 356 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 NECAP2Q9NVZ3 263 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 V9GYH0 126 aa8.09□□□□□ -1.11
VPS28-204ENST00000526054 FAM90A9PA6NNJ1 464 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR2F2O95006 317 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 IGKV1D-33P01593 117 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 IGKV1-33P01594 117 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 CD28P10747 220 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 TMEM11P17152 192 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 CD24P25063 80 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 CD1BP29016 333 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 CD40LGP29965 261 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 RCVRNP35243 200 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR3A3P47888 321 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 MRPS10P82664 201 aaKnown RBP8.08□□□□□ -1.12
VPS28-204ENST00000526054 IL18Q14116 193 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 RPL39P5Q59GN2 51 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 Q8N2B8 174 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR4F17Q8NGA8 305 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR5AP2Q8NGF4 316 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR2T10Q8NGZ9 312 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 MRAPQ8TCY5 172 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 GPX8Q8TED1 209 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 BORCS5Q969J3 196 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR4F4Q96R69 305 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 AGMATQ9BSE5 352 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 SLC25A33Q9BSK2 321 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 MRPL20Q9BYC9 149 aaKnown RBP8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR2D2Q9H210 308 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 RNF150Q9ULK6 438 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 ANAPC10Q9UM13 185 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 OR2W1Q9Y3N9 320 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 NOTCH3Q9UM47 2321 aa8.08□□□□□ -1.12
VPS28-204ENST00000526054 IGHV3-72A0A0B4J1Y9 119 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 M0QZK8 103 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 FCER2P06734 321 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 OR8U9P0C7N5 309 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 OR5H8P0DN80 308 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 NAT1P18440 290 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 NFYAP23511 347 aaPredicted RBP8.07□□□□□ -1.12
VPS28-204ENST00000526054 LUMP51884 338 aaPredicted RBP8.07□□□□□ -1.12
VPS28-204ENST00000526054 PPP5CP53041 499 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 ACTBP60709 375 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 CDK10Q15131 360 aa8.07□□□□□ -1.12
VPS28-204ENST00000526054 OXLD1Q5BKU9 147 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms