RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 GSTT2P0CG29 244 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 GSTT2BP0CG30 244 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 RPL23AP62750 156 aaKnown RBP12.84□□□□□ -0.35
LSM1-205ENST00000523511 MXD1Q05195 221 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 TMEM267Q0VDI3 215 aaPredicted RBP12.84□□□□□ -0.35
LSM1-205ENST00000523511 PLA2G7Q13093 441 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 FOXE3Q13461 319 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 C5orf64Q2M2E5 130 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 HACD4Q5VWC8 232 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 FAM131AQ6UXB0 335 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 Q6ZPA2 131 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 Q6ZS49 121 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 C1QL4Q86Z23 238 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 OR5AN1Q8NGI8 311 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 RCC1LQ96I51 464 aaKnown RBP12.84□□□□□ -0.35
LSM1-205ENST00000523511 CYYR1Q96J86 154 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 TSNAXQ99598 290 aaKnown RBP12.84□□□□□ -0.35
LSM1-205ENST00000523511 TOLLIPQ9H0E2 274 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 DIABLOQ9NR28 239 aa12.84□□□□□ -0.35
LSM1-205ENST00000523511 TRBV6-7A0A0A0MS04 114 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 A0A0A6YYH2 397 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 A0A0B4J203 849 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 SMIM30A4D0T7 59 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 A6NJ64 397 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 LINC01548A6NM66 108 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 G3V4G9 280 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 OR8U9P0C7N5 309 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 CD40LGP29965 261 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 MYCNOSP40205 109 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 GNG2P59768 71 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 IDNKQ5T6J7 187 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 SAMD5Q5TGI4 173 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 ZNF660Q6AZW8 331 aaPredicted RBP12.83□□□□□ -0.36
LSM1-205ENST00000523511 C10orf99Q6UWK7 81 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 NR2C2APQ86WQ0 139 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 PDPNQ86YL7 162 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 ZNF695Q8IW36 515 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 OR8U1Q8NH10 309 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 FLYWCH2Q96CP2 140 aaKnown RBP12.83□□□□□ -0.36
LSM1-205ENST00000523511 CABLES2Q9BTV7 478 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 MCRIP2Q9BUT9 160 aaKnown RBP12.83□□□□□ -0.36
LSM1-205ENST00000523511 ST6GALNAC5Q9BVH7 336 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 OR51J1Q9H342 316 aa12.83□□□□□ -0.36
LSM1-205ENST00000523511 ZMAT5Q9UDW3 170 aaKnown RBP12.83□□□□□ -0.36
LSM1-205ENST00000523511 H0YJW9 148 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 SLC22A5O76082 557 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 NDUFA3O95167 84 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 RRASP10301 218 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 SNRPBP14678 240 aaKnown RBP12.82□□□□□ -0.36
LSM1-205ENST00000523511 CDX1P47902 265 aaPredicted RBP12.82□□□□□ -0.36
LSM1-205ENST00000523511 RPS16P62249 146 aaKnown RBP12.82□□□□□ -0.36
LSM1-205ENST00000523511 IGSF11Q5DX21 431 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 KLHL30-AS1Q8NEE0 82 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 DPF1Q92782 380 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 RHBDL2Q9NX52 303 aa12.82□□□□□ -0.36
LSM1-205ENST00000523511 ZNF230Q9UIE0 474 aaPredicted RBP12.82□□□□□ -0.36
LSM1-205ENST00000523511 IGKV1-6A0A0C4DH72 117 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 M0R1X1 148 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 RRHO14718 337 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 AIREO43918 545 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 IGHG4P01861 327 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 LGALS7P47929 136 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 BEAN1Q3B7T3 259 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 OXLD1Q5BKU9 147 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 GLDNQ6ZMI3 551 aaPredicted RBP12.81□□□□□ -0.36
LSM1-205ENST00000523511 TCTEX1D1Q8N7M0 179 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 ADTRPQ96IZ2 230 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 HSPB9Q9BQS6 159 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 OR2D2Q9H210 308 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 PARP11Q9NR21 331 aa12.81□□□□□ -0.36
LSM1-205ENST00000523511 SPDEFO95238 335 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 THBS3P49746 956 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 RTL8BQ17RB0 113 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 KPRPQ5T749 579 aaPredicted RBP12.8□□□□□ -0.36
LSM1-205ENST00000523511 RNF152Q8N8N0 203 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 DRAXINQ8NBI3 349 aaPredicted RBP12.8□□□□□ -0.36
LSM1-205ENST00000523511 LGALS14Q8TCE9 139 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 ABHD5Q8WTS1 349 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 S100A16Q96FQ6 103 aaKnown RBP12.8□□□□□ -0.36
LSM1-205ENST00000523511 RITA1Q96K30 269 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 PARP12Q9H0J9 701 aaKnown RBP12.8□□□□□ -0.36
LSM1-205ENST00000523511 SLC35D1Q9NTN3 355 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 NECAP2Q9NVZ3 263 aa12.8□□□□□ -0.36
LSM1-205ENST00000523511 IGHV7-81A0A0B4J1V7 117 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 TRAV41A0A0B4J266 112 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 RPLP1P05386 114 aaKnown RBP12.79□□□□□ -0.36
LSM1-205ENST00000523511 CNTFRP26992 372 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 ZNF260Q3ZCT1 412 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 CNIH2Q6PI25 160 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 ZNF562Q6V9R5 426 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 MAFIPQ8WZ33 124 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 FBXL15Q9H469 300 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 METTL1Q9UBP6 276 aaKnown RBP12.79□□□□□ -0.36
LSM1-205ENST00000523511 SPATA2Q9UM82 520 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 WSB1Q9Y6I7 421 aa12.79□□□□□ -0.36
LSM1-205ENST00000523511 TRAV18A0A075B6X5 111 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 CLEC2LP0C7M8 214 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 IGLL1P15814 213 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 CBX5P45973 191 aa12.78□□□□□ -0.36
LSM1-205ENST00000523511 LUMP51884 338 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms