RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RPEQ96AT9 228 aa13.15□□□□□ -0.3
LSM1-204ENST00000522515 S1PR3Q99500 378 aa13.15□□□□□ -0.3
LSM1-204ENST00000522515 GAB2Q9UQC2 676 aa13.15□□□□□ -0.3
LSM1-204ENST00000522515 UCP3P55916 312 aa13.14□□□□□ -0.31
LSM1-204ENST00000522515 ZNF816Q0VGE8 651 aaPredicted RBP13.14□□□□□ -0.31
LSM1-204ENST00000522515 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.14□□□□□ -0.31
LSM1-204ENST00000522515 FAM96BQ9Y3D0 163 aa13.14□□□□□ -0.31
LSM1-204ENST00000522515 MXRA5Q9NR99 2828 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 MDFIC2A0A1B0GVS7 189 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 SLC22A5O76082 557 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 GAPDHP04406 335 aaKnown RBP13.13□□□□□ -0.31
LSM1-204ENST00000522515 LINC00205P59089 165 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 DEFB112Q30KQ8 113 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 PLA1AQ53H76 456 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 TGIF2LXQ8IUE1 241 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 DRAXINQ8NBI3 349 aaPredicted RBP13.13□□□□□ -0.31
LSM1-204ENST00000522515 GPHA2Q96T91 129 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 RSRP1Q9BUV0 290 aa13.13□□□□□ -0.31
LSM1-204ENST00000522515 IGHV1-3A0A0C4DH29 117 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 A0A1W2PPI3 338 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 M0R1X1 148 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 FBP1P09467 338 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 PGAM2P15259 253 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 SRD5A1P18405 259 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 PI3P19957 117 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 FAM71F2Q6NXP2 309 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 LPCAT3Q6P1A2 487 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 SLC38A6Q8IZM9 456 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 ZNF48Q96MX3 618 aaPredicted RBP13.12□□□□□ -0.31
LSM1-204ENST00000522515 MRPL20Q9BYC9 149 aaKnown RBP13.12□□□□□ -0.31
LSM1-204ENST00000522515 PALMDQ9NP74 551 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 NAV3Q8IVL0 2385 aa13.12□□□□□ -0.31
LSM1-204ENST00000522515 NSD1Q96L73 2696 aaPredicted RBP13.12□□□□□ -0.31
LSM1-204ENST00000522515 ZFHX3Q15911 3703 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 OOSP1A8MZH6 123 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 TNFSF12O43508 249 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 CT45A6P0DMU7 189 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 CT45A5P0DMU8 189 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 CT45A7P0DMV0 189 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 ECI1P42126 302 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 DCTN2Q13561 401 aaKnown RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 MSMO1Q15800 293 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 MZT2BQ6NZ67 158 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 POC5Q8NA72 575 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 BVESQ8NE79 360 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 RBMXL1Q96E39 390 aaKnown RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 AKR1E2Q96JD6 320 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 NABP2Q9BQ15 211 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 MEGF9Q9H1U4 602 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 GPR132Q9UNW8 380 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 VSIG4Q9Y279 399 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 GPR31O00270 319 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 TIMM23O14925 209 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 TXNL1O43396 289 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 SLC6A1P30531 599 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 DUTP33316 252 aaKnown RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 DEFA1P59665 94 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 DEFA3P59666 94 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 EIF4EBP1Q13541 118 aaPredicted RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 RBMS2Q15434 407 aaKnown RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 SURF2Q15527 256 aaPredicted RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 TUSC1Q2TAM9 212 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 PHLDA2Q53GA4 152 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 GLDNQ6ZMI3 551 aaPredicted RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 OR8H3Q8N146 312 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 ZBTB34Q8NCN2 500 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 ZFAND1Q8TCF1 268 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 CFHR4Q92496 578 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 SLC25A21Q9BQT8 299 aaPredicted RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 RTBDNQ9BSG5 229 aaPredicted RBP13.11□□□□□ -0.31
LSM1-204ENST00000522515 C5orf66Q9H5L9 145 aa13.11□□□□□ -0.31
LSM1-204ENST00000522515 FN1P02751 2386 aaKnown RBP13.1□□□□□ -0.31
LSM1-204ENST00000522515 IGHV3-72A0A0B4J1Y9 119 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 LINC00473A8K010 186 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 CRLF1O75462 422 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 NDUFB6O95139 128 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 CTSDP07339 412 aaPredicted RBP13.1□□□□□ -0.31
LSM1-204ENST00000522515 RAB13P51153 203 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 RPL30P62888 115 aaKnown RBP13.1□□□□□ -0.31
LSM1-204ENST00000522515 CCDC144NLQ6NUI1 221 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 MOB3BQ86TA1 216 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 CMTM1Q8IZ96 169 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 ZNF383Q8NA42 475 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 SLC2A9Q9NRM0 540 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 MTORP42345 2549 aa13.1□□□□□ -0.31
LSM1-204ENST00000522515 FAM240BA0A1B0GVZ2 78 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 PGLYRP1O75594 196 aaPredicted RBP13.09□□□□□ -0.31
LSM1-204ENST00000522515 CD24P25063 80 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 NRARPQ7Z6K4 114 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 ZDHHC22Q8N966 263 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 ZNF486Q96H40 463 aaPredicted RBP13.09□□□□□ -0.31
LSM1-204ENST00000522515 SCGB3A2Q96PL1 93 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 DPAGT1Q9H3H5 408 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 PRDM13Q9H4Q3 707 aa13.09□□□□□ -0.31
LSM1-204ENST00000522515 VGLL3A8MV65 326 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 TCRBP04435 133 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 RLN1P04808 185 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 THBS3P49746 956 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 PIGPP57054 158 aa13.08□□□□□ -0.32
LSM1-204ENST00000522515 HABP2Q14520 560 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms