RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 PLA1AQ53H76 456 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 RPL39P5Q59GN2 51 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 MINOS1Q5TGZ0 78 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 DYNAPQ8N1N2 210 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 OR10X1Q8NGY0 326 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 MARCH1Q8TCQ1 289 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 DUX5Q96PT3 197 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 SLC5A7Q9GZV3 580 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 CCL28Q9NRJ3 127 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 TNFRSF19Q9NS68 423 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 VSIG4Q9Y279 399 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 HILPDAQ9Y5L2 63 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 MINOS1-NBL1R4GNA1 71 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 NF1P21359 2839 aa12.37□□□□□ -0.43
LSM1-203ENST00000520755 HOXA3O43365 443 aaPredicted RBP12.36□□□□□ -0.43
LSM1-203ENST00000520755 GNRHRP30968 328 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 UCP3P55916 312 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 RIPPLY3P57055 190 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 HILS1P60008 231 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 Q6YL49 198 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 ZNF818PQ6ZRF7 136 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 ZNF833PQ6ZTB9 187 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 DRAM1Q8N682 238 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 ZNF645Q8N7E2 425 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 POC5Q8NA72 575 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 MALSU1Q96EH3 234 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 GPHA2Q96T91 129 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 PRDM13Q9H4Q3 707 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 ESM1Q9NQ30 184 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 SDHAF2Q9NX18 166 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 DPM3Q9P2X0 92 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 SCP2D1Q9UJQ7 156 aa12.36□□□□□ -0.43
LSM1-203ENST00000520755 AMMECR1Q9Y4X0 333 aaPredicted RBP12.36□□□□□ -0.43
LSM1-203ENST00000520755 DNAJC9-AS1A6NH13 148 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 CENPXA8MT69 81 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 LEUTXA8MZ59 168 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 HSD17B6O14756 317 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 NDUFB6O95139 128 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 VENTXO95231 258 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 IGHV4-59P01825 116 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 PI3P19957 117 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 CEACAM3P40198 252 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 GPR12P47775 334 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 TPTE2P1Q5T6R2 138 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 NRARPQ7Z6K4 114 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 JMJD8Q96S16 334 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 RSRP1Q9BUV0 290 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 PIPOXQ9P0Z9 390 aa12.35□□□□□ -0.43
LSM1-203ENST00000520755 RBM7Q9Y580 266 aaKnown RBP12.35□□□□□ -0.43
LSM1-203ENST00000520755 A0A0A6YYJ9 748 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 A0A1W2PPI3 338 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 RAB29O14966 203 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 PGAM2P15259 253 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 SPNP16150 400 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 REG1BP48304 166 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 LINC00205P59089 165 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 RBMS2Q15434 407 aaKnown RBP12.34□□□□□ -0.43
LSM1-203ENST00000520755 SURF2Q15527 256 aaPredicted RBP12.34□□□□□ -0.43
LSM1-203ENST00000520755 MSMO1Q15800 293 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 FAM71F2Q6NXP2 309 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 ZDHHC22Q8N966 263 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.34□□□□□ -0.43
LSM1-203ENST00000520755 RTN4IP1Q8WWV3 396 aaPredicted RBP12.34□□□□□ -0.43
LSM1-203ENST00000520755 RPEQ96AT9 228 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 RBMXL1Q96E39 390 aaKnown RBP12.34□□□□□ -0.43
LSM1-203ENST00000520755 SSX3Q99909 188 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 MRPL20Q9BYC9 149 aaKnown RBP12.34□□□□□ -0.43
LSM1-203ENST00000520755 C5orf66Q9H5L9 145 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 ZNF221Q9UK13 617 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 GPR132Q9UNW8 380 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 GAB2Q9UQC2 676 aa12.34□□□□□ -0.43
LSM1-203ENST00000520755 IL3RAP26951 378 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 IER3P46695 156 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 DEFA1P59665 94 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 DEFA3P59666 94 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 ZNF816Q0VGE8 651 aaPredicted RBP12.33□□□□□ -0.44
LSM1-203ENST00000520755 SLC9A3R2Q15599 337 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 LRRC75BQ2VPJ9 315 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 PHLDA2Q53GA4 152 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 MZT2BQ6NZ67 158 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 SLC38A6Q8IZM9 456 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 BVESQ8NE79 360 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 ZFAND2BQ8WV99 257 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 SSMEM1Q8WWF3 244 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 TMEM230Q96A57 120 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 RTBDNQ9BSG5 229 aaPredicted RBP12.33□□□□□ -0.44
LSM1-203ENST00000520755 MEGF9Q9H1U4 602 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 DPAGT1Q9H3H5 408 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 SLC2A9Q9NRM0 540 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 FLVCR2Q9UPI3 526 aa12.33□□□□□ -0.44
LSM1-203ENST00000520755 FAM240BA0A1B0GVZ2 78 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 BTBD17A6NE02 478 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 LINC00473A8K010 186 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 H3BUX3 64 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 M0R1X1 148 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 GPR31O00270 319 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 TNFSF12O43508 249 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 TCRBP04435 133 aa12.32□□□□□ -0.44
LSM1-203ENST00000520755 CTSDP07339 412 aaPredicted RBP12.32□□□□□ -0.44
LSM1-203ENST00000520755 ECI1P42126 302 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms