RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CDS2O95674 445 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 S100A6P06703 90 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 CD7P09564 240 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 REG1BP48304 166 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 NKX2-5P52952 324 aaPredicted RBP3.67□□□□□ -1.82
NUP54-215ENST00000514313 TSPEAR-AS2P59090 65 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 FAM229BQ4G0N7 80 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 C1orf195Q5TG92 126 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 UPK3BQ9BT76 320 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 EMC3Q9P0I2 261 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 MCTS1Q9ULC4 181 aaKnown RBP3.67□□□□□ -1.82
NUP54-215ENST00000514313 ATAD5Q96QE3 1844 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 CEP170Q5SW79 1584 aa3.67□□□□□ -1.82
NUP54-215ENST00000514313 DSCAML1Q8TD84 2053 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 TMED7-TICAM2A0A0A6YYA0 188 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 EVPLLA8MZ36 301 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 RSU1Q15404 277 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 CLVS2Q5SYC1 327 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 LPCAT4Q643R3 524 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 ZNF565Q8N9K5 539 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 C3orf18Q9UK00 162 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 C9orf84Q5VXU9 1444 aa3.66□□□□□ -1.82
NUP54-215ENST00000514313 ACOX3O15254 700 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 GSTZ1O43708 216 aaPredicted RBP3.65□□□□□ -1.83
NUP54-215ENST00000514313 CALB1P05937 261 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 ESDP10768 282 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 DDTP30046 118 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 CDK9P50750 372 aaKnown RBP3.65□□□□□ -1.83
NUP54-215ENST00000514313 AP2S1P53680 142 aaPredicted RBP3.65□□□□□ -1.83
NUP54-215ENST00000514313 TMEM33P57088 247 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 HTR4Q13639 388 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 TAF9Q16594 264 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 RASL11AQ6T310 242 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 DCXRQ7Z4W1 244 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 SLC51BQ86UW2 128 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 GPR32P1Q8NGA4 272 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 MRPS26Q9BYN8 205 aaKnown RBP3.65□□□□□ -1.83
NUP54-215ENST00000514313 C11orf1Q9H5F2 150 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 C16orf95Q9H693 158 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 HRASLSQ9HDD0 168 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 MRPL16Q9NX20 251 aaKnown RBP3.65□□□□□ -1.83
NUP54-215ENST00000514313 TAS2R9Q9NYW1 312 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 HHLA2Q9UM44 414 aa3.65□□□□□ -1.83
NUP54-215ENST00000514313 KMT2EQ8IZD2 1858 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 COL18A1P39060 1754 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 IGKV3D-11A0A0A0MRZ8 115 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 C19orf71A6NCJ1 209 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 C17orf98A8MV24 154 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 ZNF7P17097 686 aaPredicted RBP3.64□□□□□ -1.83
NUP54-215ENST00000514313 TCL1AP56279 114 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 BAP18Q8IXM2 172 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 OR11H1Q8NG94 326 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 ANKRD36BP1Q96IX9 119 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 SMDT1Q9H4I9 107 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 GUCA1BQ9UMX6 200 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 ZSWIM8A7E2V4 1837 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 EVC2Q86UK5 1308 aa3.64□□□□□ -1.83
NUP54-215ENST00000514313 TP53I11O14683 189 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 LY6HO94772 140 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 MT-CO2P00403 227 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 CTSGP08311 255 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 SLC25A16P16260 332 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 CRYBB3P26998 211 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 ATP6V0CP27449 155 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 TAS2R45P59539 299 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 IMPG1Q17R60 797 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 OR10K2Q6IF99 312 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 GID4Q8IVV7 300 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 MS4A6EQ96DS6 147 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 MGLLQ99685 303 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 NKX6-2Q9C056 277 aaPredicted RBP3.63□□□□□ -1.83
NUP54-215ENST00000514313 XPNPEP1Q9NQW7 623 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 SLC2A9Q9NRM0 540 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 HEY1Q9Y5J3 304 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 HSPE1-MOB4S4R3N1 261 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 SDK2Q58EX2 2172 aa3.63□□□□□ -1.83
NUP54-215ENST00000514313 LCTP09848 1927 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 ADAMTSL1Q8N6G6 1762 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.62□□□□□ -1.83
NUP54-215ENST00000514313 DCTN3O75935 186 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 SOD1P00441 154 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 IGKV4-1P06312 121 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 SAPCD1Q5SSQ6 148 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 C1orf194Q5T5A4 169 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 LRRC34Q8IZ02 419 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 UBL4BQ8N7F7 174 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 OR2D3Q8NGH3 330 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 OR10A6Q8NH74 314 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 GPR119Q8TDV5 335 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 CPNE2Q96FN4 548 aaPredicted RBP3.62□□□□□ -1.83
NUP54-215ENST00000514313 SNX12Q9UMY4 172 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 PTPRJQ12913 1337 aa3.62□□□□□ -1.83
NUP54-215ENST00000514313 DHRS12A0PJE2 317 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 PSG4Q00888 419 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 FAM78BQ5VT40 261 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 SBSNQ6UWP8 590 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 BRD3OSQ6XYD6 125 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 JOSD2Q8TAC2 188 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 OR51I1Q9H343 314 aa3.61□□□□□ -1.83
NUP54-215ENST00000514313 UCK1Q9HA47 277 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms