RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 MMP23AO75900 390 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 IGHV2-5P01817 119 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 LPAR6P43657 344 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 THBS3P49746 956 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 IAH1Q2TAA2 248 aaPredicted RBP13.13□□□□□ -0.31
NUP54-214ENST00000514307 DCAF12L2Q5VW00 463 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 FAM53AQ6NSI3 398 aaPredicted RBP13.13□□□□□ -0.31
NUP54-214ENST00000514307 LYZL2Q7Z4W2 148 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 LYG1Q8N1E2 194 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 ZNF596Q8TC21 504 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 C10orf105Q8TEF2 133 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 TMEM186Q96B77 213 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 RRNAD1Q96FB5 475 aaKnown RBP13.13□□□□□ -0.31
NUP54-214ENST00000514307 NARFLQ9H6Q4 476 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 HEXA-AS1Q9H8Q6 139 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 PRR13Q9NZ81 148 aa13.13□□□□□ -0.31
NUP54-214ENST00000514307 CYSRT1A8MQ03 144 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 J3QR06 171 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 ENSAO43768 121 aaKnown RBP13.12□□□□□ -0.31
NUP54-214ENST00000514307 PET100P0DJ07 73 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 GNG10P50151 68 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 LMO4P61968 165 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 EIF4EBP1Q13541 118 aaPredicted RBP13.12□□□□□ -0.31
NUP54-214ENST00000514307 THOC7Q6I9Y2 204 aaKnown RBP13.12□□□□□ -0.31
NUP54-214ENST00000514307 SPAG16Q8N0X2 631 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 KIR3DL3Q8N743 410 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 OR13D1Q8NGV5 346 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 OR10X1Q8NGY0 326 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 RNASE11Q8TAA1 199 aaKnown RBP13.12□□□□□ -0.31
NUP54-214ENST00000514307 LEAP2Q969E1 77 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 LSM10Q969L4 123 aaKnown RBP13.12□□□□□ -0.31
NUP54-214ENST00000514307 PSMG3-AS1Q96PY0 264 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 AIFM2Q9BRQ8 373 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 BPESC1Q9GZL8 116 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 IFI27L2Q9H2X8 130 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 BEX4Q9NWD9 120 aaPredicted RBP13.12□□□□□ -0.31
NUP54-214ENST00000514307 ONECUT1Q9UBC0 465 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 PKDREJQ9NTG1 2253 aa13.12□□□□□ -0.31
NUP54-214ENST00000514307 A0A1B0GU03 582 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 HMSDA8MTL9 139 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 SMLR1H3BR10 107 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 RBFOX2O43251 390 aaKnown RBP eCLIP13.11□□□□□ -0.31
NUP54-214ENST00000514307 IGHV3-7P01780 117 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 SLC25A4P12235 298 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 SLC25A6P12236 298 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 COL8A1P27658 744 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 DUTP33316 252 aaKnown RBP13.11□□□□□ -0.31
NUP54-214ENST00000514307 SMCO1Q147U7 214 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 HIST2H2BCQ6DN03 193 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 TMEM65Q6PI78 240 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 BTNL3Q6UXE8 466 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 FAM219AQ8IW50 185 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 C11orf42Q8N5U0 333 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 SLC35G3Q8N808 338 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 CLDND2Q8NHS1 167 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 PPP1R1CQ8WVI7 109 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 MARVELD3Q96A59 401 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 OR10C1Q96KK4 312 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 GPHA2Q96T91 129 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 TANC2Q9HCD6 1990 aa13.11□□□□□ -0.31
NUP54-214ENST00000514307 A0A1W2PPE3 182 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 RRASP10301 218 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 NUP62P37198 522 aaPredicted RBP13.1□□□□□ -0.31
NUP54-214ENST00000514307 ARF6P62330 175 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 FAM71F2Q6NXP2 309 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 ZBTB8BQ8NAP8 495 aaPredicted RBP13.1□□□□□ -0.31
NUP54-214ENST00000514307 PERPQ96FX8 193 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 CLEC7AQ9BXN2 247 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 AMMECR1Q9Y4X0 333 aaPredicted RBP13.1□□□□□ -0.31
NUP54-214ENST00000514307 KPTNQ9Y664 436 aa13.1□□□□□ -0.31
NUP54-214ENST00000514307 A8MXK9 166 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 SLC31A2O15432 143 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 DSCAMO60469 2012 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 UTP20O75691 2785 aaKnown RBP13.09□□□□□ -0.31
NUP54-214ENST00000514307 HPRT1P00492 218 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 SLC25A16P16260 332 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 PRTN3P24158 256 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 ARHGDIBP52566 201 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 RPL30P62888 115 aaKnown RBP13.09□□□□□ -0.31
NUP54-214ENST00000514307 ZNF585BQ52M93 769 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 RPL39P5Q59GN2 51 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 NCR3LG1Q68D85 454 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 C11orf87Q6NUJ2 197 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 ZNF546Q86UE3 836 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 LRRC75A-AS1Q8N1F1 130 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 BEND2Q8NDZ0 799 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 LHFPL5Q8TAF8 219 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 WDR89Q96FK6 387 aaPredicted RBP13.09□□□□□ -0.31
NUP54-214ENST00000514307 PLEKHA2Q9HB19 425 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 CACFD1Q9UGQ2 172 aa13.09□□□□□ -0.31
NUP54-214ENST00000514307 SAA2-SAA4A0A096LPE2 208 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 VWC2LB2RUY7 222 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 C22orf46C9J442 243 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 PROP1O75360 226 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 MPC2O95563 127 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 SAA2P0DJI9 122 aaPredicted RBP13.08□□□□□ -0.32
NUP54-214ENST00000514307 MC5RP33032 325 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 IL15RAQ13261 267 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 Q5BKY6 102 aa13.08□□□□□ -0.32
NUP54-214ENST00000514307 ZNF833PQ6ZTB9 187 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms