RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 RAG2P55895 527 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ACTA2P62736 377 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 RPL31P62899 125 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 ACTG2P63267 376 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 KLRD1Q13241 179 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 LY6EQ16553 131 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 DGUOKQ16854 277 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ECSCRQ19T08 205 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 LINC00242Q5T6M2 205 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 AADACL4Q5VUY2 407 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 LEMD1Q68G75 181 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 STUMQ69YW2 141 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ACP7Q6ZNF0 438 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 SLC25A26Q70HW3 274 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TMUB2Q71RG4 321 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 LHFPL3Q86UP9 236 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 STHQ8IWL8 128 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 C11orf53Q8IXP5 236 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ENTHD1Q8IYW4 607 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 PNKDQ8N490 385 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 CBR4Q8N4T8 237 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ZNF561Q8N587 486 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TMEM86BQ8N661 226 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ACBD7Q8N6N7 88 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 KIR3DL3Q8N743 410 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 CCDC54Q8NEL0 328 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 OR5D13Q8NGL4 314 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 NDNFQ8TB73 568 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TRUB1Q8WWH5 349 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 CYGBQ8WWM9 190 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 PP6455Q8WZ26 134 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 AQP3Q92482 292 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 FGGYQ96C11 551 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 MRPL53Q96EL3 112 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 CPNE2Q96FN4 548 aaPredicted RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 C5orf30Q96GV9 206 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 C4orf36Q96KX1 117 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 CEP19Q96LK0 163 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 GAFA1Q96PS6 74 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TBX15Q96SF7 602 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 S100A13Q99584 98 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 GABARAPL3Q9BY60 117 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 CHIAQ9BZP6 476 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 FAM192AQ9GZU8 254 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 SIRPDQ9H106 197 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 SLITRK2Q9H156 845 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TLNRD1Q9H1K6 362 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 PPA2Q9H2U2 334 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 VCXQ9H320 206 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 METTL8Q9H825 291 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 KAAG1Q9UBP8 84 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 MRM2Q9UI43 246 aaKnown RBP2.78□□□□□ -1.96
NUP54-212ENST00000513248 V9GYS6 101 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TGP01266 2768 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 CADP27708 2225 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 TACC2O95359 2948 aa2.78□□□□□ -1.96
NUP54-212ENST00000513248 ZNF469Q96JG9 3925 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 IGKV1D-17A0A075B6S4 117 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 TRBV2A0A0J9YWF9 115 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 LOC100130705A0A1B0GUX0 176 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 hADV38S2A0JD32 116 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 PQLC2LA1A4F0 135 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 IRGMA1A4Y4 181 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 DHRS7CA6NNS2 312 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 FOXI3A8MTJ6 420 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 CLDN34H7C241 214 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 SIRPB1O00241 398 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 SH2D1BO14796 132 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 DEGS1O15121 323 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 SULT1C4O75897 302 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 HAND1O96004 215 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ARG1P05089 322 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 CD2P06729 351 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 RPSAP08865 295 aaKnown RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 PGA5P0DJD9 388 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 DBTP11182 482 aaKnown RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 CCL3L1P16619 93 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 PRKACAP17612 351 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ATF1P18846 271 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 SAA4P35542 130 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 UBE2E1P51965 193 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ARHGDIBP52566 201 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 DLX1P56177 255 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 CAV3P56539 151 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OR12D2P58182 307 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 PPP3R1P63098 170 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 PAX2Q02962 417 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 IL24Q13007 206 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 GRK1Q15835 563 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 ZSCAN26Q16670 478 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 LRRC36Q1X8D7 754 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 LPCAT4Q643R3 524 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 OLFML2AQ68BL7 652 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 CCBE1Q6UXH8 406 aaPredicted RBP2.77□□□□□ -1.97
NUP54-212ENST00000513248 TMPRSS11AQ6ZMR5 421 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 SSX6Q7RTT6 188 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 Q8IYB0 196 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 RDH10Q8IZV5 341 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 FAM58AQ8N1B3 248 aa2.77□□□□□ -1.97
NUP54-212ENST00000513248 LY6G5BQ8NDX9 201 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms