RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ZNF729A6NN14 1252 aaPredicted RBP7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 KIR3DP1A8MWS1 328 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 GCGP01275 180 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 IL3RAP26951 378 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 HNRNPA3P51991 378 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 TCL1AP56279 114 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 STARD6P59095 220 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 PSG5Q15238 335 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ACSM6Q6P461 480 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 HEPN1Q6WQI6 88 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 DRAM1Q8N682 238 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 NABP1Q96AH0 204 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 SRD5A3Q9H8P0 318 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 IGKV1-27A0A075B6S5 117 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 CEACAM18A8MTB9 384 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ZG16O60844 167 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ADH4P08319 380 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF826PQ6ZT77 177 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 OR1L6Q8NGR2 347 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 REPIN1Q9BWE0 567 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 HES7Q9BYE0 225 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 A0A1W2PPE3 182 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 PROB1E7EW31 1015 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 SP1P08047 785 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 CRYGSP22914 178 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 PTGDSP41222 190 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 IER3P46695 156 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 MRPS11P82912 194 aaKnown RBP7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ID3Q02535 119 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ELOBQ15370 118 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 LRRC75BQ2VPJ9 315 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 WDR73Q6P4I2 378 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 ZIC4Q8N9L1 334 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 CHRDL1Q9BU40 450 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 OR6C3Q9NZP0 311 aa7.18□□□□□ -1.26
LIMCH1-216ENST00000512820 TRAV38-1A0A0B4J264 116 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 COL10A1Q03692 680 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 GABRA6Q16445 453 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 OR5AU1Q8NGC0 362 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TBX15Q96SF7 602 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 EGLN1Q9GZT9 426 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM167BQ9NRX6 74 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 GLRX2Q9NS18 164 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 ZDHHC8Q9ULC8 765 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 RALGAPA1Q6GYQ0 2036 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HELZP42694 1942 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 A0A1B0GV90 55 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 WIPF3A6NGB9 483 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 CHEK1O14757 476 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF253O75346 499 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 S1PR2O95136 353 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HLA-DRB5Q30154 266 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 LRP11Q86VZ4 500 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 SLC24A4Q8NFF2 622 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 IER2Q9BTL4 223 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 RFNGQ9Y644 331 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 SNURFLB1AK76 121 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM250H0YL14 139 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 SOX8P57073 446 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 INO80CQ6PI98 192 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 SPNS3Q6ZMD2 512 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 REC114Q7Z4M0 266 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 PPP1R32Q7Z5V6 425 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 C1orf210Q8IVY1 113 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TMEM183AQ8IXX5 376 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 C1orf147Q96MC9 270 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 SDF2L1Q9HCN8 221 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TECRQ9NZ01 308 aaKnown RBP7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF581Q9P0T4 197 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 C21orf140B9A014 251 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BKO60814 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 RHBDL1O75783 438 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BJP06899 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 UMODP07911 640 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BOP23527 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BBP33778 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 UCP2P55851 309 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BDP58876 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BCP62807 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST2H2BEQ16778 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TEPPQ6URK8 271 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF525Q8N782 197 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 LINC00469Q8N7U9 141 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BHQ93079 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BNQ99877 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 HIST1H2BMQ99879 126 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 FOXD3Q9UJU5 478 aaPredicted RBP7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 PILRBQ9UKJ0 227 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF835Q9Y2P0 537 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 PXMP4Q9Y6I8 212 aa7.17□□□□□ -1.26
LIMCH1-216ENST00000512820 TRAV17A0A0B4J275 112 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 HELTA6NFD8 242 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 E9PLN8 166 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 RAB29O14966 203 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 HPRT1P00492 218 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 NPY1RP25929 384 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 DEFB109BQ30KR1 87 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 FGFBP3Q8TAT2 258 aa7.16□□□□□ -1.26
LIMCH1-216ENST00000512820 CA5BP1Q8WTZ4 195 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms