RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 TAS2R46P59540 309 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 CDK10Q15131 360 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 FBLN7Q53RD9 439 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 FAM71F2Q6NXP2 309 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 FAM131AQ6UXB0 335 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 OR5AP2Q8NGF4 316 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 GPX8Q8TED1 209 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 FCAMRQ8WWV6 532 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 SNAPC3Q92966 411 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 DGCR14Q96DF8 476 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 RBMXL1Q96E39 390 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 EAF1Q96JC9 268 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 NABP2Q9BQ15 211 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 AGMATQ9BSE5 352 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 PRSS22Q9GZN4 317 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 SIGLEC9Q9Y336 463 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 OR2W1Q9Y3N9 320 aa9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 FBN1P35555 2871 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-210ENST00000509454 CLPSL1A2RUU4 121 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 FAM90A9PA6NNJ1 464 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 APOA2P02652 100 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 AADACP22760 399 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 RCVRNP35243 200 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 FXYD4P59646 89 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 HERV-K104P61576 105 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 BLCAPP62952 87 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 ABCA11PQ4W5N1 156 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 TOLLIPQ9H0E2 274 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 RANBP3Q9H6Z4 567 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 RNF114Q9Y508 228 aa9.13□□□□□ -0.95
LIMCH1-210ENST00000509454 A0A1B0GUS0 222 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 M0QZK8 103 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 SULT1C2O00338 296 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 RBBP9O75884 186 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 TUSC2O75896 110 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 TSPAN9O75954 239 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 CT45A6P0DMU7 189 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 CT45A5P0DMU8 189 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 CT45A7P0DMV0 189 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 HRH1P35367 487 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 RFX2P48378 723 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 TSPAN5P62079 268 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 CBX3Q13185 183 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 HABP2Q14520 560 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 OR52I2Q8NH67 350 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 SPATA3Q8NHX4 192 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 LINC01006Q8NI28 216 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 SECTM1Q8WVN6 248 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 ABHD1Q96SE0 405 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 ZNF251Q9BRH9 671 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 MMP27Q9H306 513 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 SDHAF2Q9NX18 166 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 WASHC3Q9Y3C0 194 aa9.12□□□□□ -0.95
LIMCH1-210ENST00000509454 IGKV1D-13A0A0B4J2D9 117 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 FABP12A6NFH5 140 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 OR5H14A6NHG9 310 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 IGKV1-13P0DP09 117 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 VSIG10L2P0DP72 767 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 TNFSF8P32971 234 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 MC5RP33032 325 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 VDAC2P45880 294 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 ACTBP60709 375 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 DGCR2P98153 550 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 MMDQ15546 238 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 PYHIN1Q6K0P9 492 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 TMEM17Q86X19 198 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 ZNF645Q8N7E2 425 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 RASL11BQ9BPW5 248 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 ZNF2Q9BSG1 426 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 SLC5A7Q9GZV3 580 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 NXF2Q9GZY0 626 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 C16orf95Q9H693 158 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 ZNF702PQ9H963 129 aa9.11□□□□□ -0.95
LIMCH1-210ENST00000509454 H0YJW9 148 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 SLC22A5O76082 557 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 TPPPO94811 219 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 PPYP01298 95 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 IFNA6P05013 189 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 NAT1P18440 290 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 THBS3P49746 956 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 COMPP49747 757 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 LINC00205P59089 165 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 EBI3Q14213 229 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 PLGLAQ15195 96 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 TMEM95Q3KNT9 176 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 ZNF383Q8NA42 475 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 SLC35D1Q9NTN3 355 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 KIAA1456Q9P272 454 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 RABL2AQ9UBK7 228 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 KLK11Q9UBX7 282 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 ANAPC10Q9UM13 185 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 RABL2BQ9UNT1 228 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 MMP24Q9Y5R2 645 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 GABARAPH6UMI1 98 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 M0QYG6 137 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 FGF16O43320 207 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 F2RL1P55085 397 aa9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 RPS16P62249 146 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-210ENST00000509454 MRPS10P82664 201 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms