RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 NRN1Q9NPD7 142 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 PGPEP1Q9NXJ5 209 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 SERGEFQ9UGK8 458 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 KCNMB2Q9Y691 235 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 MKRN2OSH3BPM6 223 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 F2RL2O00254 374 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 MGST3O14880 152 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 SLC25A20O43772 301 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 GLULP15104 373 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 GCHFRP30047 84 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 OTX1P32242 354 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 ZNF658BQ4V348 819 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 MORN3Q6PF18 240 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 ATOH7Q8N100 152 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 AQP3Q92482 292 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 PRSS27Q9BQR3 290 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 OVOL2Q9BRP0 275 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 IL36RNQ9UBH0 155 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 IZUMO1RA6ND01 250 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 PPBPP02775 128 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 CBLN1P23435 193 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 TMEM170BQ5T4T1 132 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 KCPQ6ZWJ8 1503 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 SAXO1Q8IYX7 474 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 ZNF645Q8N7E2 425 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 SDF2L1Q9HCN8 221 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 A0A1W2PP11 408 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 IFNL4K9M1U5 179 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 HOXC4P09017 264 aaPredicted RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 ESDP10768 282 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 FGF12P61328 243 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 DDB2Q92466 427 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 ELSPBP1Q96BH3 223 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 CHCHD1Q96BP2 118 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 ZNF815PA8K554 130 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 C1QL1O75973 258 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 ZP4Q12836 540 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 TBR1Q16650 682 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 MDP1Q86V88 176 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 GPR146Q96CH1 333 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 TNFRSF19Q9NS68 423 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 PEAK1Q9H792 1746 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 A0A1B0GTL3 188 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 LIPT2A6NK58 231 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 PLNP26678 52 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 ASIPP42127 132 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 RHOGP84095 191 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 OR11H4Q8NGC9 324 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 LPAR2Q9HBW0 351 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 CRYBB3P26998 211 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 STARD6P59095 220 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 SUMO2P61956 95 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 CACNG7P62955 275 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 UBE2V1Q13404 147 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 KIAA1644Q3SXP7 199 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 C1orf194Q5T5A4 169 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 LDLRAD1Q5T700 205 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 WNT10AQ9GZT5 417 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 CRISPLD2Q9H0B8 497 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 G6PC2Q9NQR9 355 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 CEACAM5P06731 702 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 IFI6P09912 130 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 ARL14EPLP0DKL9 152 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 HMGA1P17096 107 aaKnown RBP9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 MGAT2Q10469 447 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 CENPWQ5EE01 88 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 ORMDL3Q8N138 153 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 TMUB1Q9BVT8 246 aa9.73□□□□□ -0.85
LIMCH1-208ENST00000508501 K7ESM1 405 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 K7N7A8 449 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 LGALS1P09382 135 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 ERVK11-1P61568 191 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 IL11RAQ14626 422 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 ACSF3Q4G176 576 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 SAMD5Q5TGI4 173 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 ZNF562Q6V9R5 426 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 CIARTQ8N365 385 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 SCGB3A1Q96QR1 104 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 APOHP02749 345 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 SARGQ9BW04 601 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 SLC25A15Q9Y619 301 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 TRBV7-9A0A0J9YWB2 115 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 MARCH11A6NNE9 402 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 CNTFRP26992 372 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 RPL8P62917 257 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 INO80CQ6PI98 192 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 SELENOHQ8IZQ5 122 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 PLPPR2Q96GM1 343 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 C16orf92Q96LL3 132 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 ADRA2AP08913 450 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 COX7A1P24310 79 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 MFAP4P55083 255 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 PAX2Q02962 417 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 ZIC1Q15915 447 aa9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 MBNL2Q5VZF2 373 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-208ENST00000508501 ITGB1BP1O14713 200 aa9.71□□□□□ -0.85
LIMCH1-208ENST00000508501 H2BFSP57053 126 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms