RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 IGFL2Q6UWQ7 119 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 ZBTB34Q8NCN2 500 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 C1orf162Q8NEQ5 155 aaPredicted RBP8.25□□□□□ -1.09
CLIP1-204ENST00000501271 DEFB124Q8NES8 71 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 OR13A1Q8NGR1 328 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 MBD3L1Q8WWY6 194 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 TOLLIPQ9H0E2 274 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 ASCL3Q9NQ33 180 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 METTL1Q9UBP6 276 aaKnown RBP8.25□□□□□ -1.09
CLIP1-204ENST00000501271 CLN8Q9UBY8 286 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 LAMA5O15230 3695 aa8.25□□□□□ -1.09
CLIP1-204ENST00000501271 CD55P08174 381 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 CXCL1P09341 107 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 RAB11AP62491 216 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 SERF2P84101 59 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 HNF4GQ14541 408 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 ELOBQ15370 118 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 TMEM41BQ5BJD5 291 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 PIP4P1Q86T03 277 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 OR10G4Q8NGN3 311 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 Q8WTZ3 238 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 TCTEX1D2Q8WW35 142 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 TAF15Q92804 592 aaKnown RBP eCLIP8.24□□□□□ -1.09
CLIP1-204ENST00000501271 NINJ1Q92982 152 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 PARD6GQ9BYG4 376 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-204ENST00000501271 CISD1Q9NZ45 108 aaKnown RBP8.24□□□□□ -1.09
CLIP1-204ENST00000501271 OTOGLQ3ZCN5 2332 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 HCFC1P51610 2035 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 IGHV2OR16-5A0A0B4J2B6 119 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 IGHV1-18A0A0C4DH31 117 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 OR5H1A6NKK0 313 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 LRRC30A6NM36 301 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 PRR33A8MZF0 331 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 IGKV1D-33P01593 117 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 IGKV1-33P01594 117 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 IGLV1-44P01699 117 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 FTH1P19P0C7X4 201 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 NQO2P16083 231 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 ERVFRD-1P60508 538 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 CATR1Q13166 79 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 ACSF3Q4G176 576 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-204ENST00000501271 SLC16A13Q7RTY0 426 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 SLC35E3Q7Z769 313 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 C1QL4Q86Z23 238 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 ZDHHC16Q969W1 377 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 DCTN5Q9BTE1 182 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 OPN3Q9H1Y3 402 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-204ENST00000501271 URGCP-MRPS24S4R325 110 aa8.24□□□□□ -1.09
CLIP1-204ENST00000501271 EP300Q09472 2414 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-204ENST00000501271 TRAV17A0A0B4J275 112 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 MAP1LC3B2A6NCE7 125 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 LINC00473A8K010 186 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 DEFB108AA8MXU0 73 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 ST8SIA5O15466 376 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 ZG16O60844 167 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 TNFSF13O75888 250 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 RPS10P46783 165 aaKnown RBP8.23□□□□□ -1.09
CLIP1-204ENST00000501271 SMIM21Q3B7S5 101 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 CD177Q8N6Q3 437 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 ZNF610Q8N9Z0 462 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 RFESDQ8TAC1 157 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 CA5BP1Q8WTZ4 195 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 SARAFQ96BY9 339 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 MAP1LC3BQ9GZQ8 125 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 DKK4Q9UBT3 224 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 TTC28Q96AY4 2481 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 PMS2P5A8MQ11 134 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 S100A8P05109 93 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 EGR1P18146 543 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 RPS16P62249 146 aaKnown RBP8.23□□□□□ -1.09
CLIP1-204ENST00000501271 MSMO1Q15800 293 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 MSMPQ1L6U9 139 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 ZNF718Q3SXZ3 478 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 Q3ZCU0 254 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 ACSM6Q6P461 480 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 BEND4Q6ZU67 534 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 RPP25LQ8N5L8 163 aaKnown RBP8.23□□□□□ -1.09
CLIP1-204ENST00000501271 LRRC29Q8WV35 223 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 SEBOXQ9HB31 216 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-204ENST00000501271 PARD6AQ9NPB6 346 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 PLSCR4Q9NRQ2 329 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 PSG11Q9UQ72 335 aa8.23□□□□□ -1.09
CLIP1-204ENST00000501271 TGIF2-C20orf24A0A0A6YYL0 155 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 C15orf65H3BRN8 121 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 IFNL4K9M1U5 179 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 AP4M1O00189 453 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 CLDN14O95500 239 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 IFNA17P01571 189 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 SMIM6P0DI80 62 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 GCH1P30793 250 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 EDDM3AQ14507 147 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 LTC4SQ16873 150 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 SPINK9Q5DT21 86 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 MBNL2Q5VZF2 373 aaKnown RBP8.22□□□□□ -1.09
CLIP1-204ENST00000501271 NANPQ8TBE9 248 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 PINX1Q96BK5 328 aaKnown RBP8.22□□□□□ -1.09
CLIP1-204ENST00000501271 STARD4Q96DR4 205 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 TAAR6Q96RI8 345 aa8.22□□□□□ -1.09
CLIP1-204ENST00000501271 ZNF71Q9NQZ8 489 aaPredicted RBP8.22□□□□□ -1.09
CLIP1-204ENST00000501271 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms