RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TRBV9A0A0B4J1U6 114 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 TRAV24A0A0B4J272 114 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 HSPB6O14558 160 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 HMGB3O15347 200 aaKnown RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 SCRG1O75711 98 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 NTF4P34130 210 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 LINC00310P59036 64 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 SSPNQ14714 243 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 ZNF468Q5VIY5 522 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 FBXW9Q5XUX1 488 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 Q6ZS52 159 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 BATF2Q8N1L9 274 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 ZBTB34Q8NCN2 500 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 RLN3Q8WXF3 142 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 ZDHHC11Q9H8X9 412 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 MSL2Q9HCI7 577 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 ASCL3Q9NQ33 180 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 WNT16Q9UBV4 365 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 WIPI2Q9Y4P8 454 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 KNL1Q8NG31 2342 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 XIRP2A4UGR9 3374 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 YLPM1P49750 1951 aaKnown RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 A0A1B0GUS0 222 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 SS18L1O75177 396 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 TIAF1O95411 115 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 CCL3P10147 92 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 CRISP2P16562 243 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 SELEP16581 610 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 COMPP49747 757 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 PCOLCEQ15113 449 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 TRIP6Q15654 476 aaKnown RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 CPEB3Q8NE35 698 aaKnown RBP8.17□□□□□ -1.1
SYNE1-230ENST00000495090 RDH5Q92781 318 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 RNF2Q99496 336 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 HSPB9Q9BQS6 159 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 DLL3Q9NYJ7 618 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 OR1A1Q9P1Q5 309 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 SLC45A2Q9UMX9 530 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 PPP1R3CQ9UQK1 317 aa8.17□□□□□ -1.1
SYNE1-230ENST00000495090 OR5B21A6NL26 309 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 LRRC30A6NM36 301 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 C1QTNF9P0C862 333 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 KITLGP21583 273 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 TIMP3P35625 211 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 B3GALT5-AS1P59052 145 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 OR5I1Q13606 314 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 DMRTA1Q5VZB9 504 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 MRPL14Q6P1L8 145 aaKnown RBP8.16□□□□□ -1.1
SYNE1-230ENST00000495090 MRPL21Q7Z2W9 205 aaKnown RBP8.16□□□□□ -1.1
SYNE1-230ENST00000495090 TSTD1Q8NFU3 115 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 TMEM45BQ96B21 275 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 SLC35E1Q96K37 410 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 OR6C1Q96RD1 312 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 PKIBQ9C010 78 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-230ENST00000495090 RARRES3Q9UL19 164 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 PAM16Q9Y3D7 125 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 LY96Q9Y6Y9 160 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 USP34Q70CQ2 3546 aa8.16□□□□□ -1.1
SYNE1-230ENST00000495090 EPOPA6NHQ4 379 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 RBFOX2O43251 390 aaKnown RBP eCLIP8.15□□□□□ -1.1
SYNE1-230ENST00000495090 SIAH2O43255 324 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 SYNGR1O43759 233 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 SERF1AO75920 110 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 WISP2O76076 250 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 NDUFB4O95168 129 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 SRD5A2P31213 254 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 CTRLP40313 264 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 RAB7AP51149 207 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 CARD18P57730 90 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 TLE1Q04724 770 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 TFF3Q07654 80 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 TDRG1Q3Y452 100 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 GGNQ86UU5 652 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 FAM58AQ8N1B3 248 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 DRAM1Q8N682 238 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 TCTEX1D1Q8N7M0 179 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 Q8N7P7 452 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 OR10G8Q8NGN5 311 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 IL1F10Q8WWZ1 152 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 APOBEC3DQ96AK3 386 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-230ENST00000495090 TMEM204Q9BSN7 226 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 WDR54Q9H977 334 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 PLA2G3Q9NZ20 509 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 IL36BQ9NZH7 164 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 KCNS2Q9ULS6 477 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 SPAG17Q6Q759 2223 aa8.15□□□□□ -1.1
SYNE1-230ENST00000495090 SAA2-SAA4A0A096LPE2 208 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 TRAV39A0A0B4J263 110 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 MPDU1O75352 247 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 TDGF1P13385 188 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 ATP5G3P48201 142 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 SSR4P51571 173 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 PMP22Q01453 160 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 ZNF497Q6ZNH5 498 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 TCF23Q7RTU1 214 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 DEFB119Q8N690 84 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 OR5T1Q8NG75 326 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 OR1L1Q8NH94 360 aa8.15□□□□□ -1.11
SYNE1-230ENST00000495090 DTD1Q8TEA8 209 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms