RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TMEM230Q96A57 120 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 SRD5A3Q9H8P0 318 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 NPIPB13A6NJU9 1138 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 NPIPB4C9JG80 1138 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 SERF2P84101 59 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 TNFAIP6P98066 277 aaPredicted RBP14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 HERPUD1Q15011 391 aa14.02□□□□□ -0.17
CCDC88B-209ENST00000494080 SNRPCP09234 159 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 FAM157CP0CG43 387 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 PSG2P11465 335 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 CD82P27701 267 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 BTNL3Q6UXE8 466 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 TMEM108Q6UXF1 575 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 BHLHA15Q7RTS1 189 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 ABHD14AQ9BUJ0 271 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 CXXC4Q9H2H0 198 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 ZNF407Q9C0G0 2248 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 SCGB2A2Q13296 93 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 RIPPLY2Q5TAB7 128 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 FAM90A27PA6NNH2 459 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 DEFA4P12838 97 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 GNB1P62873 340 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 RTL8BQ17RB0 113 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 ZNF506Q5JVG8 444 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 C1QL2Q7Z5L3 287 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 C14orf144Q96I85 54 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 TP53RKQ96S44 253 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 RBKSQ9H477 322 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 RPRMQ9NS64 109 aa14.01□□□□□ -0.17
CCDC88B-209ENST00000494080 TAS2R45P59539 299 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 STUMQ69YW2 141 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 C17orf82Q86X59 251 aaPredicted RBP14□□□□□ -0.17
CCDC88B-209ENST00000494080 TPRX1Q8N7U7 411 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 TMEM105Q8N8V8 129 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 TAAR6Q96RI8 345 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 NUDT16L1Q9BRJ7 211 aaKnown RBP14□□□□□ -0.17
CCDC88B-209ENST00000494080 SCN8AQ9UQD0 1980 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 A0A1B0GU03 582 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 GALR2O43603 387 aaPredicted RBP14□□□□□ -0.17
CCDC88B-209ENST00000494080 NPIPB7O75200 414 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 GNG4P50150 75 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 FAM214BQ7L5A3 538 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 IGSF23A1L1A6 192 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 HAND1O96004 215 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 COL10A1Q03692 680 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 ATP6V1FQ16864 119 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 RPEL1Q2QD12 228 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 OR1L6Q8NGR2 347 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 TIMD4Q96H15 378 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 ZFHX2Q9C0A1 2572 aaPredicted RBP14□□□□□ -0.17
CCDC88B-209ENST00000494080 CHEK1O14757 476 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 IGFBP3P17936 291 aaPredicted RBP14□□□□□ -0.17
CCDC88B-209ENST00000494080 AARDQ4LEZ3 155 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 WNT5BQ9H1J7 359 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 MPDZO75970 2070 aa14□□□□□ -0.17
CCDC88B-209ENST00000494080 ACP1P24666 158 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 ELOBQ15370 118 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 SYNGR1O43759 233 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 PMELP40967 661 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 IZUMO4Q1ZYL8 232 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 MOGAT3Q86VF5 341 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 ARL6IP6Q8N6S5 226 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 TMEM204Q9BSN7 226 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 LOC390937A0A1W2PQ73 354 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 DBX1A6NMT0 343 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 MOB3AQ96BX8 217 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 BARX1Q9HBU1 254 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 MYO7BQ6PIF6 2116 aa13.99□□□□□ -0.17
CCDC88B-209ENST00000494080 CCL20P78556 96 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 MRPL54Q6P161 138 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 INO80CQ6PI98 192 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 HIF1ANQ9NWT6 349 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 HEATR5AQ86XA9 2040 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 A0A087WWC5 75 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 TRBV6-7A0A0A0MS04 114 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 LRRC3CA6NJW4 275 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 RPL36A-HNRNPH2H7BZ11 118 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 CXCL1P09341 107 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 AESQ08117 197 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 CEACAM21Q3KPI0 293 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 ACSM6Q6P461 480 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 CORO2AQ92828 525 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 P2RX4Q99571 388 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 CISD1Q9NZ45 108 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 LOC102723971A0A1B0GUV8 181 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 GRIFINA4D1Z8 144 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 C9JQL5 133 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 NDUFB4O95168 129 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 F2RP25116 425 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 CAMPP49913 170 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 SOD3P08294 240 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 HINT1P49773 126 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 PAFAH1B2P68402 229 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 HIST3H2BBQ8N257 126 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 ZNF441Q8N8Z8 693 aa13.98□□□□□ -0.17
CCDC88B-209ENST00000494080 USF1P22415 310 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 NPBWR2P48146 333 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 GTF2H5Q6ZYL4 71 aa13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 PAQR4Q8N4S7 273 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-209ENST00000494080 SLC35E1Q96K37 410 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms