RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	ZNF561	Q8N587	486 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	RBKS	Q9H477	322 aa		13.18	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNF83	P51522	516 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	GATAD1	Q8WUU5	269 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	RCC1L	Q96I51	464 aa	Known RBP	13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	NIPSNAP3B	Q9BS92	247 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	DFFB	O76075	338 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	IGKV1D-33	P01593	117 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	IGKV1-33	P01594	117 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	MMP9	P14780	707 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	WDR82	Q6UXN9	313 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	WDR31	Q8NA23	367 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	OR5T1	Q8NG75	326 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	CLCF1	Q9UBD9	225 aa		13.17	□□□□□ -0.3
BRD9-208	ENST00000489816	MUC6	Q6W4X9	2439 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	TRBV6-6	A0A0A6YYG2	114 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	DUXB	A0A1W2PPF3	345 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	TMEM30CP	A0ZSE6	113 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	LINC00473	A8K010	186 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	FTH1P19	P0C7X4	201 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	SELL	P14151	372 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	BRWD1-AS2	P59051	145 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	SLC38A11	Q08AI6	406 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	ZNRF1	Q8ND25	227 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816		Q8WTZ3	238 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	ODAM	A1E959	279 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	C5orf52	A6NGY3	159 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	MSMP	Q1L6U9	139 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	FIP1L1	Q6UN15	594 aa	Known RBP	13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	OR8G5	Q8NG78	346 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	LRRC29	Q8WV35	223 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	IL22RA2	Q969J5	263 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	NIT2	Q9NQR4	276 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	MBNL3	Q9NUK0	354 aa	Known RBP	13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	IQCF6	A8MYZ5	107 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	NDUFA6	P56556	154 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	EDDM3B	P56851	147 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	RHEB	Q15382	184 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	POM121	Q96HA1	1249 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	TAAR6	Q96RI8	345 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	SSX3	Q99909	188 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	PARD6A	Q9NPB6	346 aa		13.16	□□□□□ -0.3
BRD9-208	ENST00000489816	AGA	P20933	346 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	GCH1	P30793	250 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	TNFRSF9	Q07011	255 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816		Q8IYB0	196 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	NECAP1	Q8NC96	275 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	DEFB108B	Q8NET1	73 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	HCFC1	P51610	2035 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	CYB5B	O43169	146 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	EGR1	P18146	543 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	CD200	P41217	278 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	KIAA0141	Q14154	515 aa	Predicted RBP	13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	ACP7	Q6ZNF0	438 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	EGLN1	Q9GZT9	426 aa		13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.15	□□□□□ -0.3
BRD9-208	ENST00000489816	MDH2	P40926	338 aa	Known RBP	13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	RPP25L	Q8N5L8	163 aa	Known RBP	13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	LHX4	Q969G2	390 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	RPUSD4	Q96CM3	377 aa	Known RBP	13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	MUCL1	Q96DR8	90 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	GNG12	Q9UBI6	72 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	ABCA4	P78363	2273 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	OR8U8	P0C7N1	319 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	HBG1	P69891	147 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	HBG2	P69892	147 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	TFF3	Q07654	80 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	INO80C	Q6PI98	192 aa	Predicted RBP	13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	CD177	Q8N6Q3	437 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	MAP1LC3B2	A6NCE7	125 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	SPRY3	O43610	288 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	LSM10	Q969L4	123 aa	Known RBP	13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	TVP23C	Q96ET8	276 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	MAP1LC3B	Q9GZQ8	125 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	SLC39A9	Q9NUM3	307 aa		13.14	□□□□□ -0.31
BRD9-208	ENST00000489816	TLN1	Q9Y490	2541 aa	Known RBP	13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	GCSAML	Q5JQS6	135 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	NCR3LG1	Q68D85	454 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	ZNF645	Q8N7E2	425 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	TAF15	Q92804	592 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	WDR61	Q9GZS3	305 aa	Known RBP	13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	WIPI2	Q9Y4P8	454 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	13.13	□□□□□ -0.31
BRD9-208	ENST00000489816		M0R1B8	84 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	FCGR3B	O75015	233 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	ZNF506	Q5JVG8	444 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	ACSM6	Q6P461	480 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	MOB1B	Q7L9L4	216 aa		13.13	□□□□□ -0.31
BRD9-208	ENST00000489816	SMCO3	A2RU48	225 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	IFNA17	P01571	189 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	TRGC2	P03986	189 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	S100A9	P06702	114 aa	Known RBP	13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	ELOB	Q15370	118 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	RPL39P5	Q59GN2	51 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	GFI1B	Q5VTD9	330 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	HEPN1	Q6WQI6	88 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	H2BFWT	Q7Z2G1	175 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	LOXL4	Q96JB6	756 aa		13.12	□□□□□ -0.31
BRD9-208	ENST00000489816	IGHV1-18	A0A0C4DH31	117 aa		13.12	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms