RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RPS11P62280 158 aaKnown RBP eCLIP14.17□□□□□ -0.14
COL7A1-210ENST00000487017 ZNF841Q6ZN19 808 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 FAM222BQ8WU58 562 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 RARRES2Q99969 163 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 CISD1Q9NZ45 108 aaKnown RBP14.17□□□□□ -0.14
COL7A1-210ENST00000487017 IL36RNQ9UBH0 155 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 ZP1P60852 638 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 ECSCRQ19T08 205 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 MS4A3Q96HJ5 214 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 ZNF552Q9H707 407 aaPredicted RBP14.17□□□□□ -0.14
COL7A1-210ENST00000487017 MUC15Q8N387 334 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 FAM216AQ8WUB2 273 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 PKIBQ9C010 78 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 HEXA-AS1Q9H8Q6 139 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 FAM90A26D6RGX4 464 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 SNRPCP09234 159 aaKnown RBP14.17□□□□□ -0.14
COL7A1-210ENST00000487017 RPL31P62899 125 aaKnown RBP14.17□□□□□ -0.14
COL7A1-210ENST00000487017 TMEM187Q14656 261 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 RNFT1Q5M7Z0 435 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 PMS2CLQ68D20 193 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 SOSTQ9BQB4 213 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 HIGD1AQ9Y241 93 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 MT-ND6P03923 174 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 RND3P61587 244 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 SAXO1Q8IYX7 474 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 FGFRL1Q8N441 504 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 GBGT1Q8N5D6 347 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 PCGF1Q9BSM1 259 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 SH3BGRL3Q9H299 93 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 TGIF2-C20orf24A0A0A6YYL0 155 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 FGF5P12034 268 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 SNRNP40Q96DI7 357 aaKnown RBP14.16□□□□□ -0.14
COL7A1-210ENST00000487017 GCGP01275 180 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 REG1BP48304 166 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 GCSAMQ8N6F7 178 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 CKAP5Q14008 2032 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 A6NDN8 102 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 CXorf65A6NEN9 183 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 ID4P47928 161 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 DLX1P56177 255 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 OR1P1Q8NH06 330 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 DLL3Q9NYJ7 618 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 A0A0G2JK05 382 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 NPIPB13A6NJU9 1138 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 TMEM229AB2RXF0 380 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 NPIPB4C9JG80 1138 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 MFAP2P55001 183 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 BPIFA4PQ86YQ2 179 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 PPIAL4EA0A075B759 164 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 OR4C46A6NHA9 309 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 PPIAL4DF5H284 164 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 M0R296 226 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 PPIAL4FP0DN26 164 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 ZNF362Q5T0B9 420 aaPredicted RBP14.16□□□□□ -0.14
COL7A1-210ENST00000487017 PPIAL4AQ9Y536 164 aa14.16□□□□□ -0.14
COL7A1-210ENST00000487017 ZNHIT1O43257 154 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 SUCLG1P53597 346 aaKnown RBP14.15□□□□□ -0.14
COL7A1-210ENST00000487017 SLC25A45Q8N413 288 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 APCDD1LQ8NCL9 501 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 OR4C12Q96R67 309 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 CDX2Q99626 313 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-210ENST00000487017 C16orf97H3BN30 126 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 HYPMO75409 117 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 FAM214BQ7L5A3 538 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 UCP3P55916 312 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 DYNLRB2Q8TF09 96 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 RIPPLY2Q5TAB7 128 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 LINC00518Q8N0U6 118 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 EAF1Q96JC9 268 aaPredicted RBP14.15□□□□□ -0.14
COL7A1-210ENST00000487017 HSPB9Q9BQS6 159 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 PRDM14Q9GZV8 571 aa14.15□□□□□ -0.14
COL7A1-210ENST00000487017 IFITM10A6NMD0 228 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 RECKO95980 971 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 CEACAM18A8MTB9 384 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 GCSHP23434 173 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF714Q96N38 554 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 LOC389332A0A1B0GUA5 103 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 MPV17P39210 176 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 PRNTQ86SH4 94 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 IBA57Q5T440 356 aaKnown RBP14.14□□□□□ -0.15
COL7A1-210ENST00000487017 GPHA2Q96T91 129 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 TAF1LQ8IZX4 1826 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 IGKV3-11P04433 115 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 MMDQ15546 238 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 ABLIM2Q6H8Q1 611 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 OR51M1Q9H341 326 aa14.14□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF385CQ66K41 422 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-210ENST00000487017 CCL13Q99616 98 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 M0R3E3 92 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF818PQ6ZRF7 136 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 ZNF708P17019 499 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 CLDN18P56856 261 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 SLC35B1P78383 322 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 HOXA4Q00056 320 aaPredicted RBP14.13□□□□□ -0.15
COL7A1-210ENST00000487017 TNFRSF9Q07011 255 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 COL5A1-AS1Q5SY13 56 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 LSM10Q969L4 123 aaKnown RBP14.13□□□□□ -0.15
COL7A1-210ENST00000487017 SRXN1Q9BYN0 137 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 CCDC88CQ9P219 2028 aa14.13□□□□□ -0.15
COL7A1-210ENST00000487017 MAP1BP46821 2468 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms