RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ZNF256Q9Y2P7 627 aaPredicted RBP16.72■□□□□ 0.27
USP40-215ENST00000484528 WASHC3Q9Y3C0 194 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 TPRKBQ9Y3C4 175 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 FOXI3A8MTJ6 420 aaPredicted RBP16.71■□□□□ 0.27
USP40-215ENST00000484528 RGS10O43665 173 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 LINC00205P59089 165 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 TPBGQ13641 420 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 ZNF660Q6AZW8 331 aaPredicted RBP16.71■□□□□ 0.27
USP40-215ENST00000484528 FAM89BQ8N5H3 189 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 ASCL2Q99929 193 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 DUSP21Q9H596 190 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 Q9N2K0 584 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 C12orf4Q9NQ89 552 aa16.71■□□□□ 0.27
USP40-215ENST00000484528 FOXA2Q9Y261 457 aaPredicted RBP16.71■□□□□ 0.27
USP40-215ENST00000484528 ARL6IP5O75915 188 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 ZBTB25P24278 435 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 CALRP27797 417 aaKnown RBP16.7■□□□□ 0.26
USP40-215ENST00000484528 MAP2K4P45985 399 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 SLURP1P55000 103 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 OR5AN1Q8NGI8 311 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 EDARADDQ8WWZ3 215 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 CMSS1Q9BQ75 279 aaKnown RBP16.7■□□□□ 0.26
USP40-215ENST00000484528 PECRQ9BY49 303 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 ISYNA1Q9NPH2 558 aa16.7■□□□□ 0.26
USP40-215ENST00000484528 METTL1Q9UBP6 276 aaKnown RBP16.7■□□□□ 0.26
USP40-215ENST00000484528 IGKV1-6A0A0C4DH72 117 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 ITGB1BP1O14713 200 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 OVOL1O14753 267 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 PROP1O75360 226 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 EGR2P11161 476 aaPredicted RBP16.69■□□□□ 0.26
USP40-215ENST00000484528 MC5RP33032 325 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 CRIP2P52943 208 aaPredicted RBP16.69■□□□□ 0.26
USP40-215ENST00000484528 FABP5Q01469 135 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 MLLT11Q13015 90 aaPredicted RBP16.69■□□□□ 0.26
USP40-215ENST00000484528 PLA2G7Q13093 441 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 HES5Q5TA89 166 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 FAM3DQ96BQ1 224 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 HSF4Q9ULV5 492 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 U3KQK5 164 aa16.69■□□□□ 0.26
USP40-215ENST00000484528 IGHV4OR15-8A0A075B7B6 117 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 A0A087WW49 117 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 RBBP9O75884 186 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 IGHV3-11P01762 117 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 CPEP16870 476 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 PSG5Q15238 335 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 TRAM1Q15629 374 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 PLAC9Q5JTB6 97 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 UNQ5815/PRO19632Q6UWF5 114 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 PPP1R27Q86WC6 154 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 DLX4Q92988 240 aaPredicted RBP16.68■□□□□ 0.26
USP40-215ENST00000484528 MS4A10Q96PG2 267 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 TOLLIPQ9H0E2 274 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 TPSG1Q9NRR2 321 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 MGAT4AQ9UM21 535 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 NUBP2Q9Y5Y2 271 aa16.68■□□□□ 0.26
USP40-215ENST00000484528 SAP30O75446 220 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 CA2P00918 260 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 IGKV1-16P04430 117 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 LGALS1P09382 135 aaKnown RBP16.67■□□□□ 0.26
USP40-215ENST00000484528 NHLRC4P0CG21 123 aaPredicted RBP16.67■□□□□ 0.26
USP40-215ENST00000484528 PSMA1P25786 263 aaKnown RBP16.67■□□□□ 0.26
USP40-215ENST00000484528 C2orf76Q3KRA6 126 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 ACTBL2Q562R1 376 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 ZNF383Q8NA42 475 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 LFNGQ8NES3 379 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 MGLLQ99685 303 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 RDH8Q9NYR8 311 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 ZNF221Q9UK13 617 aa16.67■□□□□ 0.26
USP40-215ENST00000484528 TMEM272A0A1B0GTI8 110 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 LINC01619G3V211 115 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 DENRO43583 198 aaKnown RBP16.66■□□□□ 0.26
USP40-215ENST00000484528 CD3GP09693 182 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 CRHBPP24387 322 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 INSL3P51460 131 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 RPS16P62249 146 aaKnown RBP16.66■□□□□ 0.26
USP40-215ENST00000484528 TCTEX1D1Q8N7M0 179 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 OR56B1Q8NGI3 324 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 PTX4Q96A99 478 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 GHITMQ9H3K2 345 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 V9GY05 133 aa16.66■□□□□ 0.26
USP40-215ENST00000484528 M0R1X1 148 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 SLC25A17O43808 307 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 TFAP2AP05549 437 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 TPPP2P59282 170 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 TMEM267Q0VDI3 215 aaPredicted RBP16.65■□□□□ 0.26
USP40-215ENST00000484528 MOGAT2Q3SYC2 334 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 CD200R1LQ6Q8B3 271 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 PRSS48Q7RTY5 328 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 GRPEL2Q8TAA5 225 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 ARPC1AQ92747 370 aa16.65■□□□□ 0.26
USP40-215ENST00000484528 TSNAXQ99598 290 aaKnown RBP16.65■□□□□ 0.26
USP40-215ENST00000484528 TRDCB7Z8K6 153 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 LDLRAD4O15165 306 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 APOA2P02652 100 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 ZNF429Q86V71 674 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 MAFIPQ8WZ33 124 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 RNF5Q99942 180 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 KCNK7Q9Y2U2 307 aa16.64■□□□□ 0.25
USP40-215ENST00000484528 A0A075B6Q4 140 aa16.63■□□□□ 0.25
USP40-215ENST00000484528 BET1O15155 118 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms