RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TM2D1Q9BX74 207 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 SUCNR1Q9BXA5 334 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TCEAL2Q9H3H9 227 aaPredicted RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 GLIPR2Q9H4G4 154 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 DHCR7Q9UBM7 475 aaKnown RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 HHLA2Q9UM44 414 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 HS3ST2Q9Y278 367 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 SLCO1B1Q9Y6L6 691 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 SCN8AQ9UQD0 1980 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TRAV9-1A0A075B6T8 112 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 DUXBA0A1W2PPF3 345 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 RBFOX3A6NFN3 312 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 FBLL1A6NHQ2 334 aaKnown RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 A6NIN4 97 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ZNF726A6NNF4 738 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SERPINE3A8MV23 424 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 H3BMH7 237 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 PLPP1O14494 284 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 TOX3O15405 576 aaPredicted RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 COCHO43405 550 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 MMP23AO75900 390 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 CYB5R3P00387 301 aaPredicted RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 HLA-HP01893 362 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ISG15P05161 165 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 IGFBP1P08833 259 aaPredicted RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 NR2C1P13056 603 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 FABP4P15090 132 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 AKR1C4P17516 323 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 HIST1H1TP22492 207 aaPredicted RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 KIR3DL2P43630 455 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 GABRA4P48169 554 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 KLF3P57682 345 aaPredicted RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 RPS11P62280 158 aaKnown RBP eCLIP4.09□□□□□ -1.75
USP40-213ENST00000483216 RPS24P62847 133 aaKnown RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 HLA-DRB3P79483 266 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ZNF117Q03924 483 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 PRR4Q16378 134 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 TP53I3Q53FA7 332 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 AKIRIN2Q53H80 203 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 C1orf194Q5T5A4 169 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 OR2A2Q6IF42 318 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SLC8B1Q6J4K2 584 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SLC48A1Q6P1K1 146 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 RBM45Q8IUH3 476 aaKnown RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 ZNF679Q8IYX0 411 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 CEND1Q8N111 149 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 MTURNQ8N3F0 131 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SLC22A24Q8N4F4 322 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SLC35G3Q8N808 338 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 CCDC71LQ8N9Z2 235 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 OR52E2Q8NGJ4 325 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 OR52B4Q8NGK2 314 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 OR5H2Q8NGV7 314 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 OR6K6Q8NGW6 343 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 KCNG3Q8TAE7 436 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 NEK7Q8TDX7 302 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 DTD1Q8TEA8 209 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 PINX1Q96BK5 328 aaKnown RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 TECTBQ96PL2 329 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 GPA33Q99795 319 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SLC6A7Q99884 636 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 TXNDC17Q9BRA2 123 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ALG12Q9BV10 488 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 SELENOIQ9C0D9 397 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ARV1Q9H2C2 271 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ZDHHC4Q9NPG8 344 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 OR2S2Q9NQN1 319 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ZNF223Q9UK11 482 aaPredicted RBP4.09□□□□□ -1.75
USP40-213ENST00000483216 IKZF2Q9UKS7 526 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ZFP30Q9Y2G7 519 aa4.09□□□□□ -1.75
USP40-213ENST00000483216 ANAPC1Q9H1A4 1944 aa4.09□□□□□ -1.76
USP40-213ENST00000483216 A0A0A6YYD5 115 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 TRAV1-1A0A0B4J248 108 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 LRP5LA4QPB2 252 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 FAM183AA6NL82 134 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 K7ERU9 68 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CYB5BO43169 146 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 DEDDO75618 318 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ETHE1O95571 254 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CDS2O95674 445 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 MT-ATP6P00846 226 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 MAS1P04201 325 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 MRPL3P09001 348 aaKnown RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 SLC35G6P0C7Q6 338 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 PGA3P0DJD8 388 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 OR8G3PP0DMU2 310 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 COX5BP10606 129 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ERGP11308 486 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CD99P14209 185 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ZNF25P17030 456 aaPredicted RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 CD82P27701 267 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 HSD11B1P28845 292 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 CMPK1P30085 196 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 SRP14P37108 136 aaKnown RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 RND2P52198 227 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 ZNF133P52736 654 aaPredicted RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 AKR1C2P52895 323 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 RPS15AP62244 130 aaKnown RBP4.08□□□□□ -1.76
USP40-213ENST00000483216 AKR1C1Q04828 323 aa4.08□□□□□ -1.76
USP40-213ENST00000483216 SRYQ05066 204 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms