RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 STUB1Q9UNE7 303 aa13.83□□□□□ -0.2
COL9A3-212ENST00000481800 SSR3Q9UNL2 185 aa13.83□□□□□ -0.2
COL9A3-212ENST00000481800 KCNK7Q9Y2U2 307 aa13.83□□□□□ -0.2
COL9A3-212ENST00000481800 WSB1Q9Y6I7 421 aa13.83□□□□□ -0.2
COL9A3-212ENST00000481800 A0A0B4J203 849 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 IGKV1-6A0A0C4DH72 117 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 SMIM30A4D0T7 59 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 CCL24O00175 119 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 BET1O15155 118 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 ATP6V0E1O15342 81 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 RBBP9O75884 186 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 NDUFA3O95167 84 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 FCGR3AP08637 254 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 HIST1H1DP16402 221 aaKnown RBP13.82□□□□□ -0.2
COL9A3-212ENST00000481800 FGF9P31371 208 aaPredicted RBP13.82□□□□□ -0.2
COL9A3-212ENST00000481800 ARFRP1Q13795 201 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 ARL6IP1Q15041 203 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 RNF152Q8N8N0 203 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 DRAXINQ8NBI3 349 aaPredicted RBP13.82□□□□□ -0.2
COL9A3-212ENST00000481800 OR5AN1Q8NGI8 311 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 OR8U1Q8NH10 309 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 OR10J5Q8NHC4 309 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 DUX3Q96PT4 197 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 P2RX4Q99571 388 aa13.82□□□□□ -0.2
COL9A3-212ENST00000481800 TXNL4BQ9NX01 149 aaKnown RBP13.82□□□□□ -0.2
COL9A3-212ENST00000481800 IGHV7-81A0A0B4J1V7 117 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 TRAV41A0A0B4J266 112 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 NOTOA8MTQ0 251 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 RAB27BO00194 218 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 MFNGO00587 321 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 RRHO14718 337 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 TFAP2AP05549 437 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 ZNF773Q6PK81 442 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 TPRA1Q86W33 373 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 RAX2Q96IS3 184 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 RNF5Q99942 180 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 FBXL15Q9H469 300 aa13.81□□□□□ -0.2
COL9A3-212ENST00000481800 G3V318 75 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 APOA2P02652 100 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 GSTT2P0CG29 244 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 GSTT2BP0CG30 244 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 PSMB8P28062 276 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 IGSF11Q5DX21 431 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 ZNF660Q6AZW8 331 aaPredicted RBP13.8□□□□□ -0.2
COL9A3-212ENST00000481800 NR2C2APQ86WQ0 139 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 ABHD5Q8WTS1 349 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 CENPOQ9BU64 300 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 RBM7Q9Y580 266 aaKnown RBP13.8□□□□□ -0.2
COL9A3-212ENST00000481800 NOTCH3Q9UM47 2321 aa13.8□□□□□ -0.2
COL9A3-212ENST00000481800 M0R1X1 148 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 OR8U9P0C7N5 309 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 PPIFP30405 207 aaKnown RBP13.79□□□□□ -0.2
COL9A3-212ENST00000481800 HOXD3P31249 432 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-212ENST00000481800 RPS16P62249 146 aaKnown RBP13.79□□□□□ -0.2
COL9A3-212ENST00000481800 CX3CL1P78423 397 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 DEFB136Q30KP8 78 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-212ENST00000481800 C4orf3Q8WVX3 66 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 MAFIPQ8WZ33 124 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 TSNAXQ99598 290 aaKnown RBP13.79□□□□□ -0.2
COL9A3-212ENST00000481800 GINS4Q9BRT9 223 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 CABLES2Q9BTV7 478 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 ZNF230Q9UIE0 474 aaPredicted RBP13.79□□□□□ -0.2
COL9A3-212ENST00000481800 DAPK2Q9UIK4 370 aa13.79□□□□□ -0.2
COL9A3-212ENST00000481800 TRBV6-7A0A0A0MS04 114 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 PROP1O75360 226 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 DIRAS3O95661 229 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 ECSCRQ19T08 205 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 CDNFQ49AH0 187 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 PDPNQ86YL7 162 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 ZNF383Q8NA42 475 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 OR5M8Q8NGP6 311 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 FLYWCH2Q96CP2 140 aaKnown RBP13.78□□□□□ -0.2
COL9A3-212ENST00000481800 CLCC1Q96S66 551 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 TOLLIPQ9H0E2 274 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 OR2D2Q9H210 308 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 OR51E2Q9H255 320 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 METTL1Q9UBP6 276 aaKnown RBP13.78□□□□□ -0.2
COL9A3-212ENST00000481800 ZMAT5Q9UDW3 170 aaKnown RBP13.78□□□□□ -0.2
COL9A3-212ENST00000481800 RRP15Q9Y3B9 282 aaKnown RBP13.78□□□□□ -0.2
COL9A3-212ENST00000481800 A3GALT2U3KPV4 340 aa13.78□□□□□ -0.2
COL9A3-212ENST00000481800 SCGNO76038 276 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 KRTAP10-11P60412 298 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 TMEM267Q0VDI3 215 aaPredicted RBP13.77□□□□□ -0.21
COL9A3-212ENST00000481800 PSG5Q15238 335 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 SRSF7Q16629 238 aaKnown RBP eCLIP13.77□□□□□ -0.21
COL9A3-212ENST00000481800 UBE2E2Q96LR5 201 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 KLK15Q9H2R5 256 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 SLC35D1Q9NTN3 355 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 VSIG4Q9Y279 399 aa13.77□□□□□ -0.21
COL9A3-212ENST00000481800 LOC100506127A0A0U1RQW1 187 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 A0A1W2PN81 502 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 FCN1O00602 326 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 SPDEFO95238 335 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 IGLV1-40P01703 118 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 IGKV1-16P04430 117 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 DTYMKP23919 212 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 SDC2P34741 201 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 CHRNA7P36544 502 aa13.76□□□□□ -0.21
COL9A3-212ENST00000481800 RAB9AP51151 201 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms