RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 MMP7P09237 267 aaPredicted RBP12.45□□□□□ -0.42
HDAC6-220ENST00000477528 CD1BP29016 333 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 IZUMO4Q1ZYL8 232 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 ETFRF1Q6IPR1 90 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 OR4C12Q96R67 309 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 ZNF251Q9BRH9 671 aa12.45□□□□□ -0.42
HDAC6-220ENST00000477528 CHRNA7P36544 502 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 SPCS3P61009 180 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 SRSF4Q08170 494 aaKnown RBP12.44□□□□□ -0.42
HDAC6-220ENST00000477528 ANAPC16Q96DE5 110 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 IFT22Q9H7X7 185 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 TRBV6-7A0A0A0MS04 114 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 FGF16O43320 207 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 IGHV1-2P23083 117 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 ERVS71-1P61550 626 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 DBX2Q6ZNG2 339 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 CHRDL1Q9BU40 450 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 GLIPR1P48060 266 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 PRRX1P54821 245 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 BIVMQ86UB2 503 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 DIRC2Q96SL1 478 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 HSBP1L1C9JCN9 74 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 DHRS7BQ6IAN0 325 aaPredicted RBP12.44□□□□□ -0.42
HDAC6-220ENST00000477528 SSMEM1Q8WWF3 244 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 TMEM37Q8WXS4 190 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 MS4A5Q9H3V2 200 aa12.44□□□□□ -0.42
HDAC6-220ENST00000477528 IFNL4K9M1U5 179 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 PSG7Q13046 419 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 VWA1Q6PCB0 445 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 DNM1P46Q6ZS02 220 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 ASCL5Q7RTU5 278 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 MYPOPQ86VE0 399 aaPredicted RBP12.43□□□□□ -0.42
HDAC6-220ENST00000477528 RPEQ96AT9 228 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 TMEM167BQ9NRX6 74 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 JPT1Q9UK76 154 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 TRAPPC1Q9Y5R8 145 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 A0A1W2PN81 502 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 A0A1W2PPE3 182 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 FAM90A27PA6NNH2 459 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 PDE6DO43924 150 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 B2MP61769 119 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 TMEM42Q69YG0 159 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 OR10D4PQ8NGN7 298 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 TEPPQ6URK8 271 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 LRTM2Q8N967 370 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 SPSB4Q96A44 273 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 LURAP1Q96LR2 239 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 IQCF6A8MYZ5 107 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 SEC14L6B5MCN3 397 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 MPDU1O75352 247 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 CECR9P0C854 216 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 FABP4P15090 132 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 CTRB1P17538 263 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 CTRB2Q6GPI1 263 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 RTN4RL2Q86UN3 420 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 OR2T10Q8NGZ9 312 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 CCL13Q99616 98 aa12.43□□□□□ -0.42
HDAC6-220ENST00000477528 TECRQ9NZ01 308 aaKnown RBP12.43□□□□□ -0.42
HDAC6-220ENST00000477528 WNT9BO14905 357 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 S1PR2O95136 353 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 RPL31P62899 125 aaKnown RBP12.42□□□□□ -0.42
HDAC6-220ENST00000477528 ACP7Q6ZNF0 438 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 RARRES2Q99969 163 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 CALYQ9NYX4 217 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 SLC25A10Q9UBX3 287 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-220ENST00000477528 C12orf77C9JDV5 145 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 SS18L1O75177 396 aaPredicted RBP12.42□□□□□ -0.42
HDAC6-220ENST00000477528 GNG4P50150 75 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 CCL8P80075 99 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 HARBI1Q96MB7 349 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 RNF2Q99496 336 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 ZDHHC8Q9ULC8 765 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 MARCH11A6NNE9 402 aa12.42□□□□□ -0.42
HDAC6-220ENST00000477528 PPIAL4EA0A075B759 164 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 PPIAL4DF5H284 164 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 J3QR06 171 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 CELA3BP08861 270 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 PPIAL4FP0DN26 164 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 FOXG1P55316 489 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-220ENST00000477528 OR1L4Q8NGR5 311 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 FLYWCH2Q96CP2 140 aaKnown RBP12.41□□□□□ -0.42
HDAC6-220ENST00000477528 P2RX4Q99571 388 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 PSMG3Q9BT73 122 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-220ENST00000477528 SFXN3Q9BWM7 321 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 PPIAL4AQ9Y536 164 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 ELOA3CA0A087WX78 387 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-220ENST00000477528 IGKV1D-13A0A0B4J2D9 117 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 CXorf1O96002 111 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 IGKV1-13P0DP09 117 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 FAM78BQ5VT40 261 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 ATRAIDQ6UW56 229 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 OR10A7Q8NGE5 316 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 MISP3Q96FF7 219 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 DBX1A6NMT0 343 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 K7N7A8 449 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 SMIM6P0DI80 62 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 PGA5P0DJD9 388 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 SRSF7Q16629 238 aaKnown RBP eCLIP12.41□□□□□ -0.421e-6■■■□□ 17.2
HDAC6-220ENST00000477528 SLC24A4Q8NFF2 622 aa12.41□□□□□ -0.42
HDAC6-220ENST00000477528 RHOVQ96L33 236 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms