RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 LPAR5Q9H1C0 372 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 PLGRKTQ9HBL7 147 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 AK3Q9UIJ7 227 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 RNF150Q9ULK6 438 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 MGAT4AQ9UM21 535 aa15.31■□□□□ 0.04
COL9A3-210ENST00000472880 TRBV6-6A0A0A6YYG2 114 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 LINC01619G3V211 115 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 SOX15O60248 233 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 LGALS1P09382 135 aaKnown RBP15.3■□□□□ 0.04
COL9A3-210ENST00000472880 ZBTB25P24278 435 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 SLURP1P55000 103 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 MLLT11Q13015 90 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-210ENST00000472880 P2RY14Q15391 338 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 PYHIN1Q6K0P9 492 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 CASTOR1Q8WTX7 329 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 HDHD3Q9BSH5 251 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-210ENST00000472880 TOLLIPQ9H0E2 274 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 C12orf4Q9NQ89 552 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 OR1A1Q9P1Q5 309 aa15.3■□□□□ 0.04
COL9A3-210ENST00000472880 SOCS1O15524 211 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 ARSBP15848 533 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 CEACAM6P40199 344 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 TBCEQ15813 527 aaPredicted RBP15.29■□□□□ 0.04
COL9A3-210ENST00000472880 PPP1R27Q86WC6 154 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 OR5AN1Q8NGI8 311 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 DLX4Q92988 240 aaPredicted RBP15.29■□□□□ 0.04
COL9A3-210ENST00000472880 TMEM203Q969S6 136 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 RNF5Q99942 180 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 AGMATQ9BSE5 352 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 C11orf54Q9H0W9 315 aaPredicted RBP15.29■□□□□ 0.04
COL9A3-210ENST00000472880 Q9H521 79 aa15.29■□□□□ 0.04
COL9A3-210ENST00000472880 METTL1Q9UBP6 276 aaKnown RBP15.29■□□□□ 0.04
COL9A3-210ENST00000472880 RRP15Q9Y3B9 282 aaKnown RBP15.29■□□□□ 0.04
COL9A3-210ENST00000472880 FCN1O00602 326 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 SLC17A2O00624 439 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 DENRO43583 198 aaKnown RBP15.28■□□□□ 0.04
COL9A3-210ENST00000472880 CD37P11049 281 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 CPEP16870 476 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 RPS25P62851 125 aaKnown RBP15.28■□□□□ 0.04
COL9A3-210ENST00000472880 ACTBL2Q562R1 376 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 CD200R1LQ6Q8B3 271 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 UNQ5815/PRO19632Q6UWF5 114 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 CLCC1Q96S66 551 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 MGLLQ99685 303 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 FAM103A1Q9BTL3 118 aaKnown RBP15.28■□□□□ 0.04
COL9A3-210ENST00000472880 HSF4Q9ULV5 492 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 NUBP2Q9Y5Y2 271 aa15.28■□□□□ 0.04
COL9A3-210ENST00000472880 IGHV4OR15-8A0A075B7B6 117 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 A0A087WW49 117 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 ARL6IP5O75915 188 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 PSMA1P25786 263 aaKnown RBP15.27■□□□□ 0.04
COL9A3-210ENST00000472880 CD40LGP29965 261 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 GABARAPL2P60520 117 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 TRAM1Q15629 374 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 RAB11BQ15907 218 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 TMEM91Q6ZNR0 172 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 ZNF367Q7RTV3 350 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 FAM89BQ8N5H3 189 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 DRAXINQ8NBI3 349 aaPredicted RBP15.27■□□□□ 0.04
COL9A3-210ENST00000472880 OR6Q1Q8NGQ2 317 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 TSNAXQ99598 290 aaKnown RBP15.27■□□□□ 0.04
COL9A3-210ENST00000472880 Q9N2K0 584 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 ZNF221Q9UK13 617 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 GAB2Q9UQC2 676 aa15.27■□□□□ 0.04
COL9A3-210ENST00000472880 SPDEFO95238 335 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 CA2P00918 260 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 IGHV3-11P01762 117 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 APOA2P02652 100 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 SCTP09683 121 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 EGR2P11161 476 aaPredicted RBP15.26■□□□□ 0.03
COL9A3-210ENST00000472880 VEGFCP49767 419 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 TPPP2P59282 170 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 PITPNAQ00169 270 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 PSG5Q15238 335 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 AKIRIN2Q53H80 203 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 LFNGQ8NES3 379 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 ARPC1AQ92747 370 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 PTX4Q96A99 478 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 FLYWCH2Q96CP2 140 aaKnown RBP15.26■□□□□ 0.03
COL9A3-210ENST00000472880 MS4A10Q96PG2 267 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 GFI1Q99684 422 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 CMSS1Q9BQ75 279 aaKnown RBP15.26■□□□□ 0.03
COL9A3-210ENST00000472880 SLA2Q9H6Q3 261 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 ACOT13Q9NPJ3 140 aa15.26■□□□□ 0.03
COL9A3-210ENST00000472880 AK6Q9Y3D8 172 aaKnown RBP15.26■□□□□ 0.03
COL9A3-210ENST00000472880 FOXI3A8MTJ6 420 aaPredicted RBP15.25■□□□□ 0.03
COL9A3-210ENST00000472880 MRPS14O60783 128 aaKnown RBP15.25■□□□□ 0.03
COL9A3-210ENST00000472880 TFAP2AP05549 437 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 OR8U9P0C7N5 309 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 SPNP16150 400 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 RPS16P62249 146 aaKnown RBP15.25■□□□□ 0.03
COL9A3-210ENST00000472880 ACSM6Q6P461 480 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 ZNF562Q6V9R5 426 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 PDPNQ86YL7 162 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 ARHGAP5-AS1Q96IT6 56 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 TPSG1Q9NRR2 321 aa15.25■□□□□ 0.03
COL9A3-210ENST00000472880 C3orf84H3BNL1 204 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 IGKV1-16P04430 117 aa15.24■□□□□ 0.03
COL9A3-210ENST00000472880 HSPB1P04792 205 aaKnown RBP15.24■□□□□ 0.03
COL9A3-210ENST00000472880 GP9P14770 177 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms