RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 BRS3P32247 399 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 PRSS3P35030 304 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 RAB13P51153 203 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 CASC10Q5T4H9 136 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 CNIH2Q6PI25 160 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 HOGA1Q86XE5 327 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 ODF3L1Q8IXM7 274 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 GVQW1Q8N7I0 195 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 BEST4Q8NFU0 473 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 OR10J5Q8NHC4 309 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 MCFD2Q8NI22 146 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 RTN4IP1Q8WWV3 396 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 DCUN1D5Q9BTE7 237 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 C6orf62Q9GZU0 229 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 NXF2Q9GZY0 626 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 PARP12Q9H0J9 701 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 IFI27L2Q9H2X8 130 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 IFT46Q9NQC8 304 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 RDH8Q9NYR8 311 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 ANXA10Q9UJ72 324 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 MRPS7Q9Y2R9 242 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 SAA2-SAA4A0A096LPE2 208 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 IGHV1-3A0A0C4DH29 117 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 MEIS3P1A6NDR6 274 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 ST8SIA5O15466 376 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 TXNL1O43396 289 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 LANCL1O43813 399 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 TPPPO94811 219 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 SAA2P0DJI9 122 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 REG1BP48304 166 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 KRTAP10-11P60412 298 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 FAM71F2Q6NXP2 309 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 NDUFA11Q86Y39 141 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 SNX29P2Q8IUI4 249 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 Q8N2B8 174 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 GPX8Q8TED1 209 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 DGCR14Q96DF8 476 aaKnown RBP9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 GINS4Q9BRT9 223 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 AGMATQ9BSE5 352 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 PRSS22Q9GZN4 317 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 C11orf54Q9H0W9 315 aaPredicted RBP9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 SCPEP1Q9HB40 452 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 PIPOXQ9P0Z9 390 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 ANAPC10Q9UM13 185 aa9.48□□□□□ -0.89
SQSTM1-206ENST00000466342 FAM90A9PA6NNJ1 464 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 SULT1C2O00338 296 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 RAB29O14966 203 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 ARPC4P59998 168 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 HABP2Q14520 560 aaPredicted RBP9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 ZNF833PQ6ZTB9 187 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 TGIF2LXQ8IUE1 241 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 H1FOOQ8IZA3 346 aaPredicted RBP9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 DRAM1Q8N682 238 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 OR56B4Q8NH76 319 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 C15orf40Q8WUR7 153 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 SNAPC3Q92966 411 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 GHITMQ9H3K2 345 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 ZNF702PQ9H963 129 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 A3GALT2U3KPV4 340 aa9.47□□□□□ -0.89
SQSTM1-206ENST00000466342 DNAH7Q8WXX0 4024 aa9.46□□□□□ -0.89
SQSTM1-206ENST00000466342 LCE6AA0A183 80 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 FBXO24O75426 580 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 FCER2P06734 321 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 VSIG10L2P0DP72 767 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 NAT1P18440 290 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 CD24P25063 80 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 OR3A3P47888 321 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 MOB3BQ86TA1 216 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 TMEM219Q86XT9 240 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 THNSL2Q86YJ6 484 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 DIRAS2Q96HU8 199 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 ABHD14BQ96IU4 210 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 S1PR3Q99500 378 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF251Q9BRH9 671 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 SERTAD4Q9NUC0 356 aa9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 GAR1Q9NY12 217 aaKnown RBP9.46□□□□□ -0.9
SQSTM1-206ENST00000466342 ADARB2-AS1A8MUL3 147 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 SNRNP70P08621 437 aaKnown RBP9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 OR8U9P0C7N5 309 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 FAM106CPP0CH98 169 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 CD28P10747 220 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 GPR12P47775 334 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 LSAMPQ13449 338 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 CDK10Q15131 360 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 C16orf82Q7Z2V1 217 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 OR5AP2Q8NGF4 316 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 OR8U1Q8NH10 309 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 CAPSLQ8WWF8 208 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 AKR1E2Q96JD6 320 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 ABHD1Q96SE0 405 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 OR2D2Q9H210 308 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 RABL2AQ9UBK7 228 aaPredicted RBP9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 ZNF221Q9UK13 617 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 RABL2BQ9UNT1 228 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 OR2W1Q9Y3N9 320 aa9.45□□□□□ -0.9
SQSTM1-206ENST00000466342 IGHV3-72A0A0B4J1Y9 119 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 TUSC2O75896 110 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 IGKV1D-33P01593 117 aa9.44□□□□□ -0.9
SQSTM1-206ENST00000466342 IGKV1-33P01594 117 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms