RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PYHIN1Q6K0P9 492 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 UNQ5815/PRO19632Q6UWF5 114 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 LFNGQ8NES3 379 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 OR5AN1Q8NGI8 311 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 KCNG3Q8TAE7 436 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 PHYHIPQ92561 330 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 C11orf54Q9H0W9 315 aaPredicted RBP12.39□□□□□ -0.43
COL7A1-204ENST00000462475 GHITMQ9H3K2 345 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 FKBP14Q9NWM8 211 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 AK3Q9UIJ7 227 aa12.39□□□□□ -0.43
COL7A1-204ENST00000462475 ITGB1BP1O14713 200 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 PROP1O75360 226 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 RBBP9O75884 186 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 CA2P00918 260 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 HSPB1P04792 205 aaKnown RBP12.38□□□□□ -0.43
COL7A1-204ENST00000462475 MC5RP33032 325 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 LINC00205P59089 165 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 HLA-DRB3P79483 266 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 TMEM267Q0VDI3 215 aaPredicted RBP12.38□□□□□ -0.43
COL7A1-204ENST00000462475 PSG5Q15238 335 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 SRSF7Q16629 238 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL7A1-204ENST00000462475 MS4A15Q8N5U1 240 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 DRAXINQ8NBI3 349 aaPredicted RBP12.38□□□□□ -0.43
COL7A1-204ENST00000462475 LPAR5Q9H1C0 372 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 PLEKHJ1Q9NW61 149 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 METTL1Q9UBP6 276 aaKnown RBP12.38□□□□□ -0.43
COL7A1-204ENST00000462475 RNF150Q9ULK6 438 aa12.38□□□□□ -0.43
COL7A1-204ENST00000462475 TRBV6-6A0A0A6YYG2 114 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 SOCS1O15524 211 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 IGKV1-16P04430 117 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 RCN1Q15293 331 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 HSD17B12Q53GQ0 312 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 AKIRIN2Q53H80 203 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 ZNF383Q8NA42 475 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 FLYWCH2Q96CP2 140 aaKnown RBP12.37□□□□□ -0.43
COL7A1-204ENST00000462475 RHOVQ96L33 236 aa12.37□□□□□ -0.43
COL7A1-204ENST00000462475 EPPK1P58107 5090 aaKnown RBP12.36□□□□□ -0.43
COL7A1-204ENST00000462475 BPNT1O95861 308 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 TRGV3P03979 118 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 CDK1P06493 297 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 SCTP09683 121 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 CD37P11049 281 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 CPEP16870 476 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 SRMP19623 302 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 ZBTB25P24278 435 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 CEACAM6P40199 344 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 P2RY14Q15391 338 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 ZNF562Q6V9R5 426 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 CEACAM19Q7Z692 300 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 OR6M1Q8NGM8 313 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 GRPEL2Q8TAA5 225 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 EDARADDQ8WWZ3 215 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 OR4C12Q96R67 309 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 RNF5Q99942 180 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 MND1Q9BWT6 205 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 RIMS4Q9H426 269 aaPredicted RBP12.36□□□□□ -0.43
COL7A1-204ENST00000462475 ZMAT4Q9H898 229 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 GAR1Q9NY12 217 aaKnown RBP12.36□□□□□ -0.43
COL7A1-204ENST00000462475 LSM2Q9Y333 95 aaKnown RBP12.36□□□□□ -0.43
COL7A1-204ENST00000462475 DNAH1Q9P2D7 4330 aa12.36□□□□□ -0.43
COL7A1-204ENST00000462475 IGKV1-6A0A0C4DH72 117 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 FOXI3A8MTJ6 420 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-204ENST00000462475 ARPC1BO15143 372 aaKnown RBP12.35□□□□□ -0.43
COL7A1-204ENST00000462475 HSPA12AO43301 675 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 SPDEFO95238 335 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 TFAP2AP05549 437 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 UCHL1P09936 223 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 SSBP2P81877 361 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-204ENST00000462475 PTX4Q96A99 478 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 TSNAXQ99598 290 aaKnown RBP12.35□□□□□ -0.43
COL7A1-204ENST00000462475 GFI1Q99684 422 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 SLA2Q9H6Q3 261 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 Q9N2K0 584 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 C12orf4Q9NQ89 552 aa12.35□□□□□ -0.43
COL7A1-204ENST00000462475 SLC25A17O43808 307 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 IGLV1-51P01701 117 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 IGHV4-30-4P0DP06 118 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 LYL1P12980 280 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 CD40LGP29965 261 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 RPS16P62249 146 aaKnown RBP12.34□□□□□ -0.43
COL7A1-204ENST00000462475 FXYD3Q14802 87 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 SPHARQ15513 63 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 OGFRL1Q5TC84 451 aaPredicted RBP12.34□□□□□ -0.43
COL7A1-204ENST00000462475 RNLSQ5VYX0 342 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 Q8N1Y9 231 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 FAM89BQ8N5H3 189 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 POC5Q8NA72 575 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 TM2D3Q9BRN9 247 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 URM1Q9BTM9 101 aaKnown RBP12.34□□□□□ -0.43
COL7A1-204ENST00000462475 RSRP1Q9BUV0 290 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 STUB1Q9UNE7 303 aa12.34□□□□□ -0.43
COL7A1-204ENST00000462475 PTGES3LE9PB15 166 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 ATP6V1G2O95670 118 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 ARSBP15848 533 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 TMEM50BP56557 158 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 MED22Q15528 200 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 LIPKQ5VXJ0 399 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 PDPNQ86YL7 162 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 TMEM203Q969S6 136 aa12.33□□□□□ -0.44
COL7A1-204ENST00000462475 ARHGAP5-AS1Q96IT6 56 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms