RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TNFRSF9Q07011 255 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 WDR25Q64LD2 544 aaPredicted RBP13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 CENPVQ7Z7K6 275 aaPredicted RBP13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 MYPOPQ86VE0 399 aaPredicted RBP13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 HIST3H2BBQ8N257 126 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 FGFRL1Q8N441 504 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 RBKSQ9H477 322 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 SPENQ96T58 3664 aaKnown RBP13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 TRBV24-1A0A075B6N3 115 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 PHOX2AO14813 284 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 PPP1R2P9O14990 202 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 NXPH2O95156 264 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 SOD3P08294 240 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 TRGC1P0CF51 173 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 ABHD5Q8WTS1 349 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 FRZBQ92765 325 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 AGMATQ9BSE5 352 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 CTDSP1Q9GZU7 261 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 HSPB7Q9UBY9 170 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 PIEZO1Q92508 2521 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 MAP1BP46821 2468 aaKnown RBP13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 SH2D1BO14796 132 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 IGKV1D-33P01593 117 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 IGKV1-33P01594 117 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 OPN1MWP04001 364 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 OPN1MW2P0DN77 364 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 OPN1MW3P0DN78 364 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 PPP1CBP62140 327 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 OR2B11Q5JQS5 317 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 ZNF645Q8N7E2 425 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 ZBTB34Q8NCN2 500 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 SSX3Q99909 188 aa13.78□□□□□ -0.2
CLCNKA-203ENST00000439316 TRBV23-1A0A0A0MS06 115 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 CLDN1O95832 211 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 CELA3BP08861 270 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 EIF4EBP1Q13541 118 aaPredicted RBP13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 GFI1BQ5VTD9 330 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 RPP25LQ8N5L8 163 aaKnown RBP13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 TMEM178AQ8NBL3 297 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 C5orf30Q96GV9 206 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 OR2J1Q9GZK6 312 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 CACNA1GO43497 2377 aa13.77□□□□□ -0.21
CLCNKA-203ENST00000439316 ZNF729A6NN14 1252 aaPredicted RBP13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 CDIPTO14735 213 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 ZNF737O75373 536 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 PTBP3O95758 552 aaKnown RBP13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 CD81P60033 236 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 SLC10A1Q14973 349 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 GABRA6Q16445 453 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 IGFL2Q6UWQ7 119 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 CYP2G1PQ6ZSU1 146 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 OR10D4PQ8NGN7 298 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 LHX4Q969G2 390 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 WDYHV1Q96HA8 205 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 GPR61Q9BZJ8 451 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 HES4Q9HCC6 221 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 NAT8Q9UHE5 227 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 CHD3Q12873 2000 aaKnown RBP13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 ATMQ13315 3056 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 TMEM30CPA0ZSE6 113 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 HAND1O96004 215 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 MSMO1Q15800 293 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 DNLZQ5SXM8 178 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 OR8G2PQ6IF36 304 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 CDPF1Q6NVV7 123 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 ACSM6Q6P461 480 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 BEND4Q6ZU67 534 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 CDH20Q9HBT6 801 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 SLC39A9Q9NUM3 307 aa13.76□□□□□ -0.21
CLCNKA-203ENST00000439316 TMEM210A6NLX4 147 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 IQCF6A8MYZ5 107 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 RAMP3O60896 148 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 CEACAM4O75871 244 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 ERVS71-1P61550 626 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 MEF2BQ02080 365 aaPredicted RBP13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 MRPL49Q13405 166 aaKnown RBP13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 ATP6V1FQ16864 119 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 ALKBH6Q3KRA9 238 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 RNFT1Q5M7Z0 435 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 ZNF383Q8NA42 475 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 OR1L1Q8NH94 360 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 TMEM147Q9BVK8 224 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 OR2D2Q9H210 308 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 KCNIP1Q9NZI2 227 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 SPRR3Q9UBC9 169 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 WASF3Q9UPY6 502 aa13.75□□□□□ -0.21
CLCNKA-203ENST00000439316 C12orf77C9JDV5 145 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 PSPNO60542 156 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 RAC2P15153 192 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 OR3A1P47881 315 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 RPL30P62888 115 aaKnown RBP13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 PMP22Q01453 160 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 FAM180AQ6UWF9 173 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 SMIM7Q9BQ49 75 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 DEFB127Q9H1M4 99 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 SVILO95425 2214 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 DOCK7Q96N67 2140 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 IGF2RP11717 2491 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 CTXND1A0A1B0GTU2 59 aa13.74□□□□□ -0.21
CLCNKA-203ENST00000439316 ODAMA1E959 279 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms