RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 BEST4Q8NFU0 473 aa14.82□□□□□ -0.04
SHH-203ENST00000435425 SGMS2Q8NHU3 365 aa14.82□□□□□ -0.04
SHH-203ENST00000435425 RAB2BQ8WUD1 216 aa14.82□□□□□ -0.04
SHH-203ENST00000435425 RITA1Q96K30 269 aa14.82□□□□□ -0.04
SHH-203ENST00000435425 TET2Q6N021 2002 aaPredicted RBP14.82□□□□□ -0.04
SHH-203ENST00000435425 SMIM31A0A1B0GVY4 71 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 H7C2Y5 167 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 M0R1X1 148 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 PROP1O75360 226 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 DIRAS3O95661 229 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 APOA1P02647 267 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 CTXN2P0C2S0 81 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 CNTFRP26992 372 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 ACTBP60709 375 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 CENPVQ7Z7K6 275 aaPredicted RBP14.81□□□□□ -0.04
SHH-203ENST00000435425 HOGA1Q86XE5 327 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 Q8N9W7 124 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 AP3S1Q92572 193 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 RASL11BQ9BPW5 248 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 IFT46Q9NQC8 304 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 PLSCR3Q9NRY6 295 aa14.81□□□□□ -0.04
SHH-203ENST00000435425 CD28P10747 220 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 SOX6P35712 828 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 CBX5P45973 191 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 TMBIM6P55061 237 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 MMDQ15546 238 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 CMTM3Q96MX0 182 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 WNT10AQ9GZT5 417 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 SDHAF2Q9NX18 166 aa14.8□□□□□ -0.04
SHH-203ENST00000435425 PRSS3P35030 304 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 ANK2Q01484 3957 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 SLC35E3Q7Z769 313 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 SNX29P2Q8IUI4 249 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 ZNF383Q8NA42 475 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.79□□□□□ -0.04
SHH-203ENST00000435425 OR8H1Q8NGG4 311 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 LINC00527Q9UJ94 153 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 WASHC3Q9Y3C0 194 aa14.79□□□□□ -0.04
SHH-203ENST00000435425 CCDC160A6NGH7 325 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 OR5H14A6NHG9 310 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 LINC01548A6NM66 108 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 H0YJW9 148 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 FBXO24O75426 580 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 HLA-DQB1P01920 261 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 MC5RP33032 325 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 LUMP51884 338 aaPredicted RBP14.78□□□□□ -0.04
SHH-203ENST00000435425 OR5AU1Q8NGC0 362 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 C5orf30Q96GV9 206 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 NOL4LQ96MY1 436 aaPredicted RBP14.78□□□□□ -0.04
SHH-203ENST00000435425 LIN7CQ9NUP9 197 aaKnown RBP14.78□□□□□ -0.04
SHH-203ENST00000435425 OR2W1Q9Y3N9 320 aa14.78□□□□□ -0.04
SHH-203ENST00000435425 M0QZ24 198 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 NBR2O15453 112 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 RGS5O15539 181 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 APOA2P02652 100 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 C10orf99Q6UWK7 81 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 OR5AN1Q8NGI8 311 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 SNAPC3Q92966 411 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 ISOC1Q96CN7 298 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 BCL7BQ9BQE9 202 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 NECAP2Q9NVZ3 263 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 KIAA1456Q9P272 454 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 GAB2Q9UQC2 676 aa14.77□□□□□ -0.05
SHH-203ENST00000435425 H3BMQ9 156 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 FCGR2CP31995 323 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 RNASE12Q5GAN4 147 aaKnown RBP14.76□□□□□ -0.05
SHH-203ENST00000435425 FOXRED2Q8IWF2 684 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 FAM71E2Q8N5Q1 922 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 OR5AP2Q8NGF4 316 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 HSPB9Q9BQS6 159 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 SLC35D1Q9NTN3 355 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 EXTL2Q9UBQ6 330 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 CEPT1Q9Y6K0 416 aa14.76□□□□□ -0.05
SHH-203ENST00000435425 IGKV1D-13A0A0B4J2D9 117 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 CTDSP2O14595 271 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 IGHG2P01859 326 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 OR5H8P0DN80 308 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 IGKV1-13P0DP09 117 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 RPS16P62249 146 aaKnown RBP14.75□□□□□ -0.05
SHH-203ENST00000435425 CDK10Q15131 360 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 PLGLAQ15195 96 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 NSUN5P1Q3KNT7 163 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 ZNF329Q86UD4 541 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 DYNC2LI1Q8TCX1 351 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 WIPF2Q8TF74 440 aaPredicted RBP14.75□□□□□ -0.05
SHH-203ENST00000435425 CITED2Q99967 270 aaPredicted RBP14.75□□□□□ -0.05
SHH-203ENST00000435425 FBXL15Q9H469 300 aa14.75□□□□□ -0.05
SHH-203ENST00000435425 PSMB11A5LHX3 300 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 TUSC2O75896 110 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 PMP2P02689 132 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 AADACP22760 399 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 THBS3P49746 956 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 ZNF645Q8N7E2 425 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 BVESQ8NE79 360 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 NPBQ8NG41 125 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 MIXL1Q9H2W2 232 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 EHFQ9NZC4 300 aa14.74□□□□□ -0.05
SHH-203ENST00000435425 ZNF107Q9UII5 783 aaPredicted RBP14.74□□□□□ -0.05
SHH-203ENST00000435425 A0A1W2PRX2 142 aa14.73□□□□□ -0.05
SHH-203ENST00000435425 RBBP9O75884 186 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms