RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF735P0CB33 412 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 SAA2P0DJI9 122 aaPredicted RBP8.22□□□□□ -1.09
CD44-207ENST00000425428 RRASP10301 218 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 SLC6A1P30531 599 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 MC5RP33032 325 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 SAA4P35542 130 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 RAB13P51153 203 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 CCR6P51684 374 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 SSX2Q16385 188 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 ZNF660Q6AZW8 331 aaPredicted RBP8.22□□□□□ -1.09
CD44-207ENST00000425428 LHFPL1Q86WI0 220 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 TCTEX1D1Q8N7M0 179 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 OR13C8Q8NGS7 320 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 TCTEX1D2Q8WW35 142 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 CAPSLQ8WWF8 208 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 RSRP1Q9BUV0 290 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 GPN1Q9HCN4 374 aaPredicted RBP8.22□□□□□ -1.09
CD44-207ENST00000425428 CCL28Q9NRJ3 127 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 HILPDAQ9Y5L2 63 aa8.22□□□□□ -1.09
CD44-207ENST00000425428 ODF3BA8MYP8 253 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 H7C2Y5 167 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 H2AFB2P0C5Z0 115 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 AKR1C4P17516 323 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 ZNF134P52741 427 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 PIGPP57054 158 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 UBE2MP61081 183 aaKnown RBP8.21□□□□□ -1.1
CD44-207ENST00000425428 PRB3Q04118 309 aaPredicted RBP8.21□□□□□ -1.1
CD44-207ENST00000425428 BAMBIQ13145 260 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 C4orf46Q504U0 113 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 PHLDA2Q53GA4 152 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 TPTE2P1Q5T6R2 138 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 KCTD9Q7L273 389 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 DRAM1Q8N682 238 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 BVESQ8NE79 360 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 OR4P4Q8NGL7 312 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 FXYD6Q9H0Q3 95 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 C20orf85Q9H1P6 137 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 IFI27L2Q9H2X8 130 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 SDHAF2Q9NX18 166 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 TBC1D24Q9ULP9 559 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 CSPG4Q6UVK1 2322 aa8.21□□□□□ -1.1
CD44-207ENST00000425428 SLC31A2O15432 143 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 SERPINE2P07093 398 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 IGHV4-38-2P0DP08 117 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 SRD5A1P18405 259 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 GNRHRP30968 328 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 ZNF137PP52743 207 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 DLX1P56177 255 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 RAB25P57735 213 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 ZNF816Q0VGE8 651 aaPredicted RBP8.2□□□□□ -1.1
CD44-207ENST00000425428 TMEM128Q5BJH2 165 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 BRD3OSQ6XYD6 125 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 ZNF818PQ6ZRF7 136 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 ZNF833PQ6ZTB9 187 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 RTN4IP1Q8WWV3 396 aaPredicted RBP8.2□□□□□ -1.1
CD44-207ENST00000425428 AGMATQ9BSE5 352 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 SLC2A9Q9NRM0 540 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 NUDT15Q9NV35 164 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 GPR132Q9UNW8 380 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 VPS13CQ709C8 3753 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 TRAV6A0A075B6T7 132 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 IGKV1D-13A0A0B4J2D9 117 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 ARPC1BO15143 372 aaKnown RBP8.2□□□□□ -1.1
CD44-207ENST00000425428 TNFSF12O43508 249 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 FAM106CPP0CH98 169 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 IGKV1-13P0DP09 117 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 VAMP1P23763 118 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 RND3P61587 244 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 SRPXP78539 464 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 IFITM3Q01628 133 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 HES1Q14469 280 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 RPL39P5Q59GN2 51 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 NRARPQ7Z6K4 114 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 DUSP18Q8NEJ0 188 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 OR51H1Q8NH63 302 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 PARP12Q9H0J9 701 aaKnown RBP8.2□□□□□ -1.1
CD44-207ENST00000425428 PITPNC1Q9UKF7 332 aa8.2□□□□□ -1.1
CD44-207ENST00000425428 HIVEP2P31629 2446 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 SETXQ7Z333 2677 aaKnown RBP8.19□□□□□ -1.1
CD44-207ENST00000425428 MPPED1O15442 326 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 PRAF2O60831 178 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 PGLYRP1O75594 196 aaPredicted RBP8.19□□□□□ -1.1
CD44-207ENST00000425428 REG1BP48304 166 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 ERVK-16P61578 105 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 DHODHQ02127 395 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 RUSC1-AS1Q66K80 236 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 DHRS7BQ6IAN0 325 aaPredicted RBP8.19□□□□□ -1.1
CD44-207ENST00000425428 HCP5Q6MZN7 132 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 FAM53AQ6NSI3 398 aaPredicted RBP8.19□□□□□ -1.1
CD44-207ENST00000425428 TBC1D26Q86UD7 250 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 OR4S2Q8NH73 311 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 RNASE11Q8TAA1 199 aaKnown RBP8.19□□□□□ -1.1
CD44-207ENST00000425428 SLC35D1Q9NTN3 355 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 WASHC3Q9Y3C0 194 aa8.19□□□□□ -1.1
CD44-207ENST00000425428 ACANP16112 2415 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 CSMD1Q96PZ7 3565 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 IGHV1-3A0A0C4DH29 117 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 C3orf85A0A1B0GTC6 90 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 INMT-MINDY4F8WBC2 141 aa8.18□□□□□ -1.1
CD44-207ENST00000425428 PEX14O75381 377 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms