RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 PLXND1Q9Y4D7 1925 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.43□□□□□ -1.06
USP54-205ENST00000424265 SERPINE2P07093 398 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 ZNF85Q03923 595 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 HSD52Q0P140 79 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 ATOH7Q8N100 152 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 OR10V1Q8NGI7 309 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 EMC6Q9BV81 110 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 WNT10AQ9GZT5 417 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 ZNF71Q9NQZ8 489 aaPredicted RBP8.43□□□□□ -1.06
USP54-205ENST00000424265 DLL3Q9NYJ7 618 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 SMPXQ9UHP9 88 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 ST6GALNAC2Q9UJ37 374 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 RCL1Q9Y2P8 373 aaKnown RBP8.43□□□□□ -1.06
USP54-205ENST00000424265 RHBDD3Q9Y3P4 386 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 RALGAPA1Q6GYQ0 2036 aa8.43□□□□□ -1.06
USP54-205ENST00000424265 ANGPTL7O43827 346 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 FAM87AP0C7U9 286 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 SAXO1Q8IYX7 474 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 TMEM256Q8N2U0 113 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 OR52N5Q8NH56 324 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 CENPVL1A0A0U1RR11 272 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 ABHD16AO95870 558 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 PI3P19957 117 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 CDKN1AP38936 164 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 GFRA1P56159 465 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 MEP1BQ16820 701 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 CEACAM21Q3KPI0 293 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 CCDC144NLQ6NUI1 221 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 LCN15Q6UWW0 184 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 DOK3Q7L591 496 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 ADGRE4PQ86SQ3 457 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 RSG1Q9BU20 258 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 RAB9BQ9NP90 201 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 OBP2BQ9NPH6 170 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 DPRXA6NFQ7 191 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 SIRPB1O00241 398 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 ADH4P08319 380 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 GPM6AP51674 278 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 GNB2P62879 340 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 OR8G5Q8NG78 346 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 RTN4IP1Q8WWV3 396 aaPredicted RBP8.42□□□□□ -1.06
USP54-205ENST00000424265 RND1Q92730 232 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 PELI1Q96FA3 418 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 NRASP01111 189 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 KRASP01116 189 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 PSMB3P49720 205 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 TLE1Q04724 770 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 CEACAM16Q2WEN9 425 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 FNDC7Q5VTL7 733 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 LGI3Q8N145 548 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 TMEM217Q8N7C4 229 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 BORCS8Q96FH0 119 aa8.42□□□□□ -1.06
USP54-205ENST00000424265 SHISA8B8ZZ34 492 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 IGHMP01871 453 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 PSG9Q00887 426 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 ICAM4Q14773 271 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 TESK1Q15569 626 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 C5orf30Q96GV9 206 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 RSPO3Q9BXY4 272 aaPredicted RBP8.41□□□□□ -1.06
USP54-205ENST00000424265 TTC28Q96AY4 2481 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 ZNF90Q03938 601 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 OTOSQ8NHW6 89 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 PPP1R35Q8TAP8 253 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 AQP3Q92482 292 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 SDF2L1Q9HCN8 221 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 RP1P56715 2156 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 NUP214P35658 2090 aaPredicted RBP8.41□□□□□ -1.06
USP54-205ENST00000424265 SLC33A1O00400 549 aaPredicted RBP8.41□□□□□ -1.06
USP54-205ENST00000424265 ZNF83P51522 516 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 LYPD6BQ8NI32 183 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 PTX4Q96A99 478 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 ZNF775Q96BV0 537 aaPredicted RBP8.41□□□□□ -1.06
USP54-205ENST00000424265 GPA33Q99795 319 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 PIMREGQ9BSJ6 248 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 IFNL4K9M1U5 179 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 CDC42EP2O14613 210 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 CRYAAP02489 173 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 CLPSP04118 112 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 NPY1RP25929 384 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 CDKN2AP42771 156 aaKnown RBP8.41□□□□□ -1.06
USP54-205ENST00000424265 GPR6P46095 362 aaPredicted RBP8.41□□□□□ -1.06
USP54-205ENST00000424265 RHOGP84095 191 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 HLA-DRB5Q30154 266 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 TCTEX1D4Q5JR98 221 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 MUC15Q8N387 334 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 UFC1Q9Y3C8 167 aa8.41□□□□□ -1.06
USP54-205ENST00000424265 IGHV3-15A0A0B4J1V0 119 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 A0A0J9YW62 118 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 M0R2Z0 102 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 DEDDO75618 318 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 ATP5IP56385 69 aaPredicted RBP8.4□□□□□ -1.06
USP54-205ENST00000424265 ATP1A1-AS1Q5TC04 95 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 COLCA1Q6ZS62 124 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 OR5A1Q8NGJ0 315 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 R4GMQ9 66 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 KIAA1324LA8MWY0 1029 aaPredicted RBP8.4□□□□□ -1.06
USP54-205ENST00000424265 ISLRO14498 428 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 FAM57BQ71RH2 274 aa8.4□□□□□ -1.06
USP54-205ENST00000424265 BATF2Q8N1L9 274 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms