RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 IGHV3-43A0A0B4J1X8 118 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 LINC00862A6NCI5 91 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 IGHV3-43DP0DP04 118 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 CHODLQ9H9P2 273 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 SDHAF2Q9NX18 166 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 TRAV14DV4A0A0A6YYC5 116 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 TRAV39A0A0B4J263 110 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 IGKV1D-13A0A0B4J2D9 117 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 BTBD17A6NE02 478 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 FCGR3BO75015 233 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 SCGB2A1O75556 95 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 IFNA1P01562 189 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 RBP4P02753 201 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 IGKV1-13P0DP09 117 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 GNLYP22749 145 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 SSTR5P35346 364 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 CAMLGP49069 296 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 GNB2P62879 340 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 DAZAP2Q15038 168 aaPredicted RBP6.99□□□□□ -1.29
USP54-203ENST00000418501 C2orf68Q2NKX9 166 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 ALKAL2Q6UX46 152 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 C8orf31Q8N9H6 132 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 UNKLQ9H9P5 680 aaKnown RBP6.99□□□□□ -1.29
USP54-203ENST00000418501 UBTD1Q9HAC8 227 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 KRBOX1C9JBD0 128 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 H7C2Y5 167 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 PITX3O75364 302 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 MBP02144 154 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 HOXA1P49639 335 aaPredicted RBP6.99□□□□□ -1.29
USP54-203ENST00000418501 ZNF816Q0VGE8 651 aaPredicted RBP6.99□□□□□ -1.29
USP54-203ENST00000418501 HEPN1Q6WQI6 88 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 OR10P1Q8NGE3 313 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 SMIM8Q96KF7 97 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 SLC35D1Q9NTN3 355 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 LYRM2Q9NU23 88 aaPredicted RBP6.99□□□□□ -1.29
USP54-203ENST00000418501 MED9Q9NWA0 146 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 ZNF581Q9P0T4 197 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 RPUSD1Q9UJJ7 312 aaKnown RBP6.99□□□□□ -1.29
USP54-203ENST00000418501 SVILO95425 2214 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 IGKV1-6A0A0C4DH72 117 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 LIPFP07098 398 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 SULT1A1P50225 295 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 TLE4Q04727 773 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 UQCC3Q6UW78 93 aa6.99□□□□□ -1.29
USP54-203ENST00000418501 DEFB108AA8MXU0 73 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 KRASP01116 189 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 SEC11BP0C7V7 166 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 DPPA3Q6W0C5 159 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 FGFRL1Q8N441 504 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 GPR146Q96CH1 333 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 FREM1Q5H8C1 2179 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 SCO1O75880 301 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 OR8U8P0C7N1 319 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 PDLIM4P50479 330 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 LGALS4P56470 323 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 FAM216BQ8N7L0 139 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 TPRX1Q8N7U7 411 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 UBAC2Q8NBM4 344 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 OR4D5Q8NGN0 318 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 C22orf15Q8WYQ4 148 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 HEYLQ9NQ87 328 aaPredicted RBP6.98□□□□□ -1.29
USP54-203ENST00000418501 REV3LO60673 3130 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 ZNF705EA8MWA4 302 aaPredicted RBP6.98□□□□□ -1.29
USP54-203ENST00000418501 ZG16O60844 167 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 ZNF205O95201 554 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 HKR1P10072 659 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 SPCS3P61009 180 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 CCDC144NLQ6NUI1 221 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 IL34Q6ZMJ4 242 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 OR4A5Q8NH83 315 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 UBALD1Q8TB05 177 aa6.98□□□□□ -1.29
USP54-203ENST00000418501 KLF2Q9Y5W3 355 aaPredicted RBP6.98□□□□□ -1.29
USP54-203ENST00000418501 DVL1O14640 695 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 TSPAN15O95858 294 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 BTNL3Q6UXE8 466 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 TGIF2LYQ8IUE0 185 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 TGIF2LXQ8IUE1 241 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 OSR1Q8TAX0 266 aaPredicted RBP6.97□□□□□ -1.29
USP54-203ENST00000418501 TMEM204Q9BSN7 226 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 FBXL17Q9UF56 701 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 A0A1W2PN81 502 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 C15orf65H3BRN8 121 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 CHRNA7P36544 502 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 EFNA4P52798 201 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 ERHP84090 104 aaKnown RBP6.97□□□□□ -1.29
USP54-203ENST00000418501 EWSR1Q01844 656 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP54-203ENST00000418501 ID3Q02535 119 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 LINC00469Q8N7U9 141 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 NARS2Q96I59 477 aaKnown RBP6.97□□□□□ -1.29
USP54-203ENST00000418501 ATP5SQ99766 215 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 PCGF1Q9BSM1 259 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 PRR13Q9NZ81 148 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 MED19A0JLT2 244 aaPredicted RBP6.97□□□□□ -1.29
USP54-203ENST00000418501 I3L521 148 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 ENSAO43768 121 aaKnown RBP6.97□□□□□ -1.29
USP54-203ENST00000418501 CHST1O43916 411 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 IFNA10P01566 189 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 COX6B1P14854 86 aa6.97□□□□□ -1.29
USP54-203ENST00000418501 TAGLN2P37802 199 aaKnown RBP6.97□□□□□ -1.29
USP54-203ENST00000418501 SNCAP37840 140 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms