RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ST8SIA3O43173 380 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 CRYZL1O95825 349 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 MBPP02686 304 aaPredicted RBP11.09□□□□□ -0.63
LIMS1-204ENST00000409441 LMO1P25800 156 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 GPR157Q5UAW9 335 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 TMEM268Q5VZI3 342 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 DUX4L9Q6RFH8 374 aaPredicted RBP11.09□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF818PQ6ZRF7 136 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF695Q8IW36 515 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 FOXRED2Q8IWF2 684 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF561Q8N587 486 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 FAM216BQ8N7L0 139 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 SLC35G3Q8N808 338 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 OR4D5Q8NGN0 318 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 GAFA1Q96PS6 74 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 MBNL3Q9NUK0 354 aaKnown RBP11.09□□□□□ -0.63
LIMS1-204ENST00000409441 A0A096LNT2 108 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 IGKV1D-13A0A0B4J2D9 117 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 NKX6-3A6NJ46 265 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 SIRPB1O00241 398 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 SIGLEC5O15389 551 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 GPR137BO60478 399 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 SCGB1D2O95969 90 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 IGHV2-5P01817 119 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 IGKV1-13P0DP09 117 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 P2RY1P47900 373 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 SELENOHQ8IZQ5 122 aaKnown RBP11.09□□□□□ -0.63
LIMS1-204ENST00000409441 OR8B3Q8NGG8 313 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 OR5D13Q8NGL4 314 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 NEIL1Q96FI4 390 aaPredicted RBP11.09□□□□□ -0.63
LIMS1-204ENST00000409441 OR8B2Q96RD0 313 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 CCL28Q9NRJ3 127 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 CTSZQ9UBR2 303 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 POMT1Q9Y6A1 747 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 RAB19A4D1S5 217 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 DVL1O14640 695 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 NDUFB3O43676 98 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 PSPNO60542 156 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 ZNF737O75373 536 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 JTBO76095 146 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 SELLP14151 372 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 RCC1P18754 421 aaPredicted RBP11.08□□□□□ -0.64
LIMS1-204ENST00000409441 M6PRP20645 277 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 IL2RGP31785 369 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 LOXL1Q08397 574 aaPredicted RBP11.08□□□□□ -0.64
LIMS1-204ENST00000409441 HMGN3Q15651 99 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 UQCC3Q6UW78 93 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 ZNF841Q6ZN19 808 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 STPG2Q8N412 459 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 MAPK1IP1LQ8NDC0 245 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 PLPPR1Q8TBJ4 325 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 RAB39BQ96DA2 213 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 AKR1E2Q96JD6 320 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 LINC00052Q96N35 136 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 TRAPPC2LQ9UL33 140 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 MYO9AB2RTY4 2548 aa11.08□□□□□ -0.64
LIMS1-204ENST00000409441 K7N7A8 449 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 HSD17B6O14756 317 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 FCN3O75636 299 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 HEXAP06865 529 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 LRRC10Q5BKY1 277 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 C5orf24Q7Z6I8 188 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 CIARTQ8N365 385 aaPredicted RBP11.07□□□□□ -0.64
LIMS1-204ENST00000409441 OR10V1Q8NGI7 309 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 SAT2Q96F10 170 aaPredicted RBP11.07□□□□□ -0.64
LIMS1-204ENST00000409441 SNX22Q96L94 193 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 FAM234AQ9H0X4 552 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 TAF9BQ9HBM6 251 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 TAS2R3Q9NYW6 316 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 SLC25A10Q9UBX3 287 aaPredicted RBP11.07□□□□□ -0.64
LIMS1-204ENST00000409441 CLN8Q9UBY8 286 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 FBXL17Q9UF56 701 aa11.07□□□□□ -0.64
LIMS1-204ENST00000409441 TMEM30CPA0ZSE6 113 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 TEX46H3BTG2 121 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 PGLYRP1O75594 196 aaPredicted RBP11.06□□□□□ -0.64
LIMS1-204ENST00000409441 NDUFB7P17568 137 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 VDAC1P21796 283 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 GNB2P62879 340 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 GNMTQ14749 295 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 WDR25Q64LD2 544 aaPredicted RBP11.06□□□□□ -0.64
LIMS1-204ENST00000409441 RPL7L1Q6DKI1 246 aaKnown RBP11.06□□□□□ -0.64
LIMS1-204ENST00000409441 SLC35E4Q6ICL7 350 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 FGFRL1Q8N441 504 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 OR52M1Q8NGK5 317 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 PPP1R35Q8TAP8 253 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 TMED6Q8WW62 240 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 MARC2Q969Z3 335 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 OR2S2Q9NQN1 319 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 RCL1Q9Y2P8 373 aaKnown RBP11.06□□□□□ -0.64
LIMS1-204ENST00000409441 TEX15Q9BXT5 2789 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 FAM157AC9JC47 383 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 FAM157CP0CG43 387 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 SLC25A6P12236 298 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 MMP9P14780 707 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 PVALBP20472 110 aaPredicted RBP11.06□□□□□ -0.64
LIMS1-204ENST00000409441 F2RP25116 425 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 OR3A1P47881 315 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 UBAC2Q8NBM4 344 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 ARL11Q969Q4 196 aa11.06□□□□□ -0.64
LIMS1-204ENST00000409441 SSBP3Q9BWW4 388 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms