RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ZNF780BQ9Y6R6 833 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 NRKQ7Z2Y5 1582 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 DHX57Q6P158 1386 aaKnown RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 PALLDQ8WX93 1383 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 TECPR2O15040 1411 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 NUP188Q5SRE5 1749 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 NRAPQ86VF7 1730 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 SPEF2Q9C093 1822 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 IGHV6-1A0A0B4J1U7 121 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 UPK2O00526 184 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 APOA2P02652 100 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 C1QBP02746 253 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 TTRP02766 147 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 OR5G3P0C626 314 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 UBBP0CG47 229 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 MPC1LP0DKB6 136 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 COX7A1P24310 79 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CRIP2P52943 208 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 HSPE1P61604 102 aaKnown RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 C16orf72Q14CZ0 275 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 RBMY1FQ15415 496 aaKnown RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 NEDD8Q15843 81 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 GUCA2BQ16661 112 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 FAM182AQ5T1J6 154 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 HAGHLQ6PII5 290 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 C2orf66Q6UXQ4 117 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 ALKAL1Q6UXT8 129 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 OSR2Q8N2R0 312 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 OR51A2Q8NGJ7 313 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 OR9I1Q8NGQ6 314 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 OR4C6Q8NH72 309 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 ZNRF2Q8NHG8 242 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 RXFP4Q8TDU9 374 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CANT1Q8WVQ1 401 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 TMEM159Q96B96 161 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 RNF157Q96PX1 679 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 HSPB9Q9BQS6 159 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 POLR2J2Q9GZM3 115 aaKnown RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 TMEM126AQ9H061 195 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 POLR2J3Q9H1A7 115 aaKnown RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CACNG5Q9UF02 275 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 PRSS21Q9Y6M0 314 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 PTPRJQ12913 1337 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 E9PCH4 1651 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 PLCH1Q4KWH8 1693 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 SHANK3Q9BYB0 1731 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 CASZ1Q86V15 1759 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 NAIPQ13075 1403 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 MYOM1P52179 1685 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 A0A096LPI6 279 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 BORCS7-ASMTA0A0B4J1R7 106 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 C20orf202A1L168 122 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 KLLNB2CW77 178 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 EEF1E1-BLOC1S5C9J1V9 151 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 COPEO14579 308 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 MRASO14807 208 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 GYG2O15488 501 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 EEF1E1O43324 174 aaKnown RBP3.04□□□□□ -1.92
HMGB1-204ENST00000399489 ATP5G1P05496 136 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 PGAM2P15259 253 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 MUC1P15941 1255 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-204ENST00000399489 DDTP30046 118 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 GLRXP35754 106 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 CCL23P55773 120 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 H2BFSP57053 126 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 MAXP61244 160 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 PKIAP61925 76 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 RUNX1Q01196 453 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 PMAIP1Q13794 54 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 ARFRP1Q13795 201 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 LTC4SQ16873 150 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF404Q494X3 552 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 CENPWQ5EE01 88 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 COA6Q5JTJ3 125 aaKnown RBP3.04□□□□□ -1.92
HMGB1-204ENST00000399489 SLC25A30Q5SVS4 291 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 ZFAND6Q6FIF0 208 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 NANOGP8Q6NSW7 305 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 DNAJC24Q6P3W2 148 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF613Q6PF04 617 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 AGTRAPQ6RW13 159 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 H2AFVQ71UI9 128 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 STRADAQ7RTN6 431 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 C11orf53Q8IXP5 236 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 SLC35G3Q8N808 338 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 OR10G6Q8NH81 332 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 SMIM8Q96KF7 97 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 KCNS1Q96KK3 526 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 CNBD2Q96M20 576 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 OR7D2Q96RA2 312 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 KLF6Q99612 283 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-204ENST00000399489 GNB1LQ9BYB4 327 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 SAMD10Q9BYL1 202 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 ULBP3Q9BZM4 244 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 NANOGQ9H9S0 305 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 MRPL27Q9P0M9 148 aaKnown RBP3.04□□□□□ -1.92
HMGB1-204ENST00000399489 RBM12B-AS1Q9P1G2 102 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 PCYOX1Q9UHG3 505 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 BTRCQ9Y297 605 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 KIF1BO60333 1816 aa3.04□□□□□ -1.92
HMGB1-204ENST00000399489 OVOS2A0A0J9YW53 1432 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms