RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 FOXS1O43638 330 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 CD99P14209 185 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 APOBEC3AP31941 199 aaPredicted RBP6.22□□□□□ -1.41
UPF2-203ENST00000397053 RBM11P57052 281 aaKnown RBP6.22□□□□□ -1.41
UPF2-203ENST00000397053 KIAA0040Q15053 153 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 PLPPR5Q32ZL2 321 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 LYZL2Q7Z4W2 148 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 AQP10Q96PS8 301 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 WNK1Q9H4A3 2382 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 SCN3AQ9NY46 2000 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 H7C1H1 209 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 C1QAP02745 245 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 FGF5P12034 268 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 MRPL13Q9BYD1 178 aaKnown RBP6.22□□□□□ -1.41
UPF2-203ENST00000397053 HEATR1Q9H583 2144 aaKnown RBP6.22□□□□□ -1.41
UPF2-203ENST00000397053 IDI2-AS1Q9NZ38 188 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 TOMM7Q9P0U1 55 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 OPN4Q9UHM6 478 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 EXOGQ9Y2C4 368 aaKnown RBP6.22□□□□□ -1.41
UPF2-203ENST00000397053 TNFRSF18Q9Y5U5 241 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 LTN1O94822 1766 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 CD1AP06126 327 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 LCN2P80188 198 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 CDCP2Q5VXM1 449 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 SIGIRRQ6IA17 410 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 PRSS27Q9BQR3 290 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 COL25A1Q9BXS0 654 aaPredicted RBP6.22□□□□□ -1.41
UPF2-203ENST00000397053 ANGPTL4Q9BY76 406 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 HS3ST3B1Q9Y662 390 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 PXMP4Q9Y6I8 212 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 CRHP06850 196 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 MVDP53602 400 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 RAG2P55895 527 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 EWSR1Q01844 656 aaKnown RBP eCLIP6.21□□□□□ -1.41
UPF2-203ENST00000397053 GCSAMLQ5JQS6 135 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 CLRN3Q8NCR9 226 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 PILRBQ9UKJ0 227 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 CCDC88CQ9P219 2028 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 CACNA1AO00555 2505 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 OR4C45A6NMZ5 311 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 LMX1BO60663 402 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 RPS20P60866 119 aaKnown RBP6.21□□□□□ -1.41
UPF2-203ENST00000397053 FAM74A3Q4VXF1 159 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 PQLC2Q6ZP29 291 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 ZAR1Q86SH2 424 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 TMEM186Q96B77 213 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 GPR61Q9BZJ8 451 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 FRRS1LQ9P0K9 344 aa6.21□□□□□ -1.41
UPF2-203ENST00000397053 CCDC88AQ3V6T2 1871 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 FAM208BQ5VWN6 2430 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 IGHV3-49A0A0A0MS15 119 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 OR2H2O95918 312 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 BGLAPP02818 100 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 VSIG8P0DPA2 414 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 PSG9Q00887 426 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 MBNL2Q5VZF2 373 aaKnown RBP6.21□□□□□ -1.42
UPF2-203ENST00000397053 CD300LDQ6UXZ3 194 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 FDCSPQ8NFU4 85 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 SAP25Q8TEE9 199 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 SCMH1Q96GD3 660 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 TMEM204Q9BSN7 226 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 TMEM70Q9BUB7 260 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 QTRT1Q9BXR0 403 aaKnown RBP6.21□□□□□ -1.42
UPF2-203ENST00000397053 PRO1933Q9H354 126 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 ELOVL5Q9NYP7 299 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 IGHV1-45A0A0A0MS14 117 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 TMEM50BP56557 158 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 ST3GAL2Q16842 350 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 FAM209BQ5JX69 171 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 CFAP161Q6P656 301 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 OR8D4Q8NGM9 314 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 NEU4Q8WWR8 484 aaPredicted RBP6.21□□□□□ -1.42
UPF2-203ENST00000397053 ABHD17AQ96GS6 310 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 LRRC3BQ96PB8 259 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 DUX3Q96PT4 197 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 NRTNQ99748 197 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 VGLL1Q99990 258 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 ZNF407Q9C0G0 2248 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 CD74P04233 296 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 HMGA2P52926 109 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 FGF12P61328 243 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 SLC25A45Q8N413 288 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 ZNF721Q8TF20 911 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 ADAT3Q96EY9 351 aaPredicted RBP6.21□□□□□ -1.42
UPF2-203ENST00000397053 NEU1Q99519 415 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 MAP1LC3AQ9H492 121 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 DPM3Q9P2X0 92 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 FUT9Q9Y231 359 aa6.21□□□□□ -1.42
UPF2-203ENST00000397053 ARHGEF17Q96PE2 2063 aaPredicted RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 DXOO77932 396 aaKnown RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 TDGF1P13385 188 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 DMKNQ6E0U4 476 aaPredicted RBP6.2□□□□□ -1.42
UPF2-203ENST00000397053 TCF24Q7RTU0 167 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 MON2Q7Z3U7 1717 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 BDP1A6H8Y1 2624 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 ZNHIT1O43257 154 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 UNC119Q13432 240 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 AANATQ16613 207 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 NUDT10Q8NFP7 164 aa6.2□□□□□ -1.42
UPF2-203ENST00000397053 KLF14Q8TD94 323 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms