RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ELOVL1Q9BW60 279 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 SPRY4Q9C004 299 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 OR2J1Q9GZK6 312 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 PARLQ9H300 379 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 ARHGAP21Q5T5U3 1957 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 KMT2EQ8IZD2 1858 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 SMCO3A2RU48 225 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 PSPNO60542 156 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 NXPH2O95156 264 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 HOXA4Q00056 320 aaPredicted RBP10.68□□□□□ -0.7
SHMT1-205ENST00000395684 OR10G9Q8NGN4 311 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 OR10G7Q8NGN6 311 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 GPR87Q9BY21 358 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 LAMP3Q9UQV4 416 aa10.68□□□□□ -0.7
SHMT1-205ENST00000395684 ZDBF2Q9HCK1 2354 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 ODAMA1E959 279 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 LRRC30A6NM36 301 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 TMEM250H0YL14 139 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 DEFA4P12838 97 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 TUBG1P23258 451 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 DDTP30046 118 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 PSMB3P49720 205 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 PKIAP61925 76 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 PLGLB1Q02325 96 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 Q8IYB0 196 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 ZNF808Q8N4W9 903 aaPredicted RBP10.67□□□□□ -0.7
SHMT1-205ENST00000395684 ZNF645Q8N7E2 425 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 OR2D2Q9H210 308 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 CTXND1A0A1B0GTU2 59 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 RNF212BA8MTL3 300 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 C9orf172C9J069 976 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 SH2D1BO14796 132 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 AMBPP02760 352 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 ACP1P24666 158 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 GALR1P47211 349 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 OR3A1P47881 315 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 TFF3Q07654 80 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 EIF4EBP1Q13541 118 aaPredicted RBP10.67□□□□□ -0.7
SHMT1-205ENST00000395684 OR52L2PQ8NGH6 319 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 OR4F5Q8NH21 305 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 ZDHHC16Q969W1 377 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 OR4F4Q96R69 305 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 POLDIP2Q9Y2S7 368 aa10.67□□□□□ -0.7
SHMT1-205ENST00000395684 ZG16O60844 167 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 S1PR2O95136 353 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 GRPP07492 148 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 FGF7P21781 194 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 P2RY6Q15077 328 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 FBXW9Q5XUX1 488 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 PCGF1Q9BSM1 259 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 FOXJ2Q9P0K8 574 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 GTF3C1Q12789 2109 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 USF3Q68DE3 2245 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 COL27A1Q8IZC6 1860 aaPredicted RBP10.66□□□□□ -0.7
SHMT1-205ENST00000395684 C17orf98A8MV24 154 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 C12orf77C9JDV5 145 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 H7BYZ3 331 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 GZMBP10144 247 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 LINC00205P59089 165 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 PMP22Q01453 160 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 JOSD1Q15040 202 aaPredicted RBP10.66□□□□□ -0.7
SHMT1-205ENST00000395684 FFAR4Q5NUL3 377 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 OR1P1Q8NH06 330 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 OR5R1Q8NH85 324 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 RAB24Q969Q5 203 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 MEGF10Q96KG7 1140 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 TMEM147Q9BVK8 224 aa10.66□□□□□ -0.7
SHMT1-205ENST00000395684 A0A087X0M5 115 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 A0A1B0GX30 115 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 SMPD2O60906 423 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 HAND1O96004 215 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 LPAL2Q16609 132 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 ATP6V1FQ16864 119 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 ZNF766Q5HY98 468 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 DCAF10Q5QP82 559 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 ZNF66Q6ZN08 573 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 REC114Q7Z4M0 266 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 TGIF2LYQ8IUE0 185 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 GALMQ96C23 342 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.65□□□□□ -0.7
SHMT1-205ENST00000395684 A0A1W2PPQ1 181 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 XKRY2A2RUG3 117 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 PPP5D1E7EU14 171 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 TSTD3H0UI37 97 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 PAGE4O60829 102 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 NPPCP23582 126 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 PPP1CBP62140 327 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 MSMO1Q15800 293 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 TBC1D28Q2M2D7 210 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 SPINK9Q5DT21 86 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 BTNL3Q6UXE8 466 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 OR10P1Q8NGE3 313 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 RNASEH2CQ8TDP1 164 aaKnown RBP10.65□□□□□ -0.7
SHMT1-205ENST00000395684 DTD1Q8TEA8 209 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 IER2Q9BTL4 223 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 NPCDR1Q9BY65 106 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 KCNIP1Q9NZI2 227 aa10.65□□□□□ -0.7
SHMT1-205ENST00000395684 DOCK11Q5JSL3 2073 aa10.65□□□□□ -0.71
SHMT1-205ENST00000395684 A0A1W2PNU3 283 aaPredicted RBP10.64□□□□□ -0.71
SHMT1-205ENST00000395684 DVL1O14640 695 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms