RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 FSTP19883 344 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 RAC3P60763 192 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 DSPPQ9NZW4 1301 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 TRBV5-5A0A0J9YX44 114 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 INSIG2Q9Y5U4 225 aa10.27□□□□□ -0.77
SYNPO-202ENST00000394243 MDC1Q14676 2089 aaKnown RBP10.27□□□□□ -0.77
SYNPO-202ENST00000394243 TPRP12270 2363 aaKnown RBP10.27□□□□□ -0.77
SYNPO-202ENST00000394243 TNFSF15O95150 251 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 WDYHV1Q96HA8 205 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF414Q96IQ9 312 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ZPBPQ9BS86 351 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 RTN4RQ9BZR6 473 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ATG2BQ96BY7 2078 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ICE1Q9Y2F5 2266 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 TRGV8A0A0C4DH27 118 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 CD8AP01732 235 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 HYAL1Q12794 435 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 MBNL2Q5VZF2 373 aaKnown RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 WFDC3Q8IUB2 231 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 FAM181AQ8N9Y4 354 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 SPAG8Q99932 426 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 PRSS27Q9BQR3 290 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 IGHV3OR15-7A0A075B7D8 119 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 CENPVL1A0A0U1RR11 272 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 A6NNC1 897 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 MOGAT3Q86VF5 341 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 SIGMAR1Q99720 223 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ANAPC13Q9BS18 74 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 TMUB1Q9BVT8 246 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 MBD1Q9UIS9 605 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 SF3B6Q9Y3B4 125 aaKnown RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 H3BUT2 72 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 LIPFP07098 398 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 CTSSP25774 331 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 REG1BP48304 166 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 EAF1Q96JC9 268 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 TGFAP01135 160 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ASAH2BP0C7U1 165 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 FOXA3P55318 350 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 C19orf54Q5BKX5 351 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 BHLHA9Q7RTU4 235 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 POC1AQ8NBT0 407 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 LINC00470Q9BZP3 86 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 KCNMB2Q9Y691 235 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 SLX4Q8IY92 1834 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 SRD5A2P31213 254 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 FAM19A2Q8N3H0 131 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF441Q8N8Z8 693 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 NFAM1Q8NET5 270 aaPredicted RBP10.26□□□□□ -0.77
SYNPO-202ENST00000394243 SERGEFQ9UGK8 458 aa10.26□□□□□ -0.77
SYNPO-202ENST00000394243 CA11O75493 328 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 PGLYRP1O75594 196 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-202ENST00000394243 FAM60AQ9NP50 221 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 R4GN57 208 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 A0A1W2PQD3 144 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 CGB1A6NKQ9 187 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 MEF2CQ06413 473 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-202ENST00000394243 FAM53AQ6NSI3 398 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-202ENST00000394243 GALNT14Q96FL9 552 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 NUDT11Q96G61 164 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 CHRNA10Q9GZZ6 450 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 PIKFYVEQ9Y2I7 2098 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF646O15015 1829 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-202ENST00000394243 HIST1H1AQ02539 215 aaPredicted RBP10.25□□□□□ -0.77
SYNPO-202ENST00000394243 UNC119Q13432 240 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 C2orf68Q2NKX9 166 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 TCF24Q7RTU0 167 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 S1PR2O95136 353 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 GAB4Q2WGN9 574 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 FGFRL1Q8N441 504 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 C18orf15Q96N68 181 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 HILPDAQ9Y5L2 63 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 KIF13BQ9NQT8 1826 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 RAMP1O60894 148 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF708P17019 499 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 TFPI2P48307 235 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 CIRBPQ14011 172 aaKnown RBP10.25□□□□□ -0.77
SYNPO-202ENST00000394243 TMEM95Q3KNT9 176 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 CENPWQ5EE01 88 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 ZIC3O60481 467 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 WDR54Q9H977 334 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 RABAC1Q9UI14 185 aa10.25□□□□□ -0.77
SYNPO-202ENST00000394243 CACNA1DQ01668 2161 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 GABRG2P18507 467 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 CTGFP29279 349 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 CRYBG1Q9Y4K1 1723 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 DNAL4O96015 105 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 P2RY6Q15077 328 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 SCNM1Q9BWG6 230 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 SLC17A3O00476 420 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 UBE2CO00762 179 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 TMEM78Q5T7P6 136 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 ZNF645Q8N7E2 425 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 UCN2Q96RP3 112 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 CXorf51AA0A1B0GTR3 108 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 NEUROG1Q92886 237 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 SSC5DA1L4H1 1573 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 OR11H12B2RN74 326 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 DLX6P56179 175 aa10.24□□□□□ -0.77
SYNPO-202ENST00000394243 HBBP68871 147 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms