RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ZGRF1Q86YA3 2104 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 PLXNA4Q9HCM2 1894 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 CNN1P51911 297 aaKnown RBP11.26□□□□□ -0.61
NPHP4-203ENST00000378169 B2MP61769 119 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 TMEM187Q14656 261 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 ABLIM2Q6H8Q1 611 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 WBP1Q96G27 269 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 TLNRD1Q9H1K6 362 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 SH3BGRL3Q9H299 93 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 SH2D2AQ9NP31 389 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 TICRRQ7Z2Z1 1910 aa11.26□□□□□ -0.61
NPHP4-203ENST00000378169 PLCE1Q9P212 2302 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 CDX4O14627 284 aaPredicted RBP11.25□□□□□ -0.61
NPHP4-203ENST00000378169 GAPDHP04406 335 aaKnown RBP11.25□□□□□ -0.61
NPHP4-203ENST00000378169 KIR2DS2P43631 304 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 Q0VFX4 171 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 BSXQ3C1V8 233 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 ZNF880Q6PDB4 577 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 OR10A7Q8NGE5 316 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 VSTM2AQ8TAG5 236 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 FAM210BQ96KR6 192 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 TMEM204Q9BSN7 226 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 A0A1W2PN81 502 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 DUXBA0A1W2PPF3 345 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 C11orf94C9JXX5 98 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 RAB29O14966 203 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 CLN5O75503 358 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 IGHV1-2P23083 117 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 SELENOHQ8IZQ5 122 aaKnown RBP11.25□□□□□ -0.61
NPHP4-203ENST00000378169 POC1AQ8NBT0 407 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 WDYHV1Q96HA8 205 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 RTBDNQ9BSG5 229 aaPredicted RBP11.25□□□□□ -0.61
NPHP4-203ENST00000378169 IGKV1D-8A0A087WSZ0 117 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 SAXO1Q8IYX7 474 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 VKORC1L1Q8N0U8 176 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 DRAM1Q8N682 238 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 BMPERQ8N8U9 685 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 C9orf106Q8NAJ2 232 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 SEMA5BQ9P283 1151 aa11.25□□□□□ -0.61
NPHP4-203ENST00000378169 RANBP2P49792 3224 aaKnown RBP11.25□□□□□ -0.61
NPHP4-203ENST00000378169 H3BQ15 152 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 SMPD2O60906 423 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 CD8AP01732 235 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 HOXB1P14653 301 aaPredicted RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 DLK1P80370 383 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 GGNQ86UU5 652 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 BCL2L2Q92843 193 aaPredicted RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 SLC45A2Q9UMX9 530 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 FRMPD3Q5JV73 1810 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 FAM74A7A6NL05 159 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 UBE2L3P68036 154 aaKnown RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 PSG5Q15238 335 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 FAM74A3Q4VXF1 159 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 CYB561D1Q8N8Q1 229 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 DCTN5Q9BTE1 182 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 FAM103A1Q9BTL3 118 aaKnown RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 GAR1Q9NY12 217 aaKnown RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 A0A0A6YYD4 124 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 H0YL77 283 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 LY86O95711 162 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 GAMTQ14353 236 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 Q56UQ5 140 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 SPNS3Q6ZMD2 512 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 OR2T6Q8NHC8 308 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 ABHD17AQ96GS6 310 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 OR4C12Q96R67 309 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 PITX3O75364 302 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 S1PR2O95136 353 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 GALR1P47211 349 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 ZNF385CQ66K41 422 aaPredicted RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 SLC35E3Q7Z769 313 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 SNX22Q96L94 193 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 SEBOXQ9HB31 216 aaPredicted RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 CALYQ9NYX4 217 aa11.24□□□□□ -0.61
NPHP4-203ENST00000378169 CISD1Q9NZ45 108 aaKnown RBP11.24□□□□□ -0.61
NPHP4-203ENST00000378169 FAM87AP0C7U9 286 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 RTN4RL2Q86UN3 420 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 UBTD1Q9HAC8 227 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 BARX1Q9HBU1 254 aaPredicted RBP11.23□□□□□ -0.61
NPHP4-203ENST00000378169 VAX2Q9UIW0 290 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 TIMM9Q9Y5J7 89 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 GBF1Q92538 1859 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 K7N7A8 449 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 HPRT1P00492 218 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 CRYBA1P05813 215 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 FAM209AQ5JX71 171 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 CLCF1Q9UBD9 225 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 FOXD3Q9UJU5 478 aaPredicted RBP11.23□□□□□ -0.61
NPHP4-203ENST00000378169 DENND4CQ5VZ89 1909 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 CHEK1O14757 476 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 PHOX2AO14813 284 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 SLC25A5P05141 298 aaKnown RBP11.23□□□□□ -0.61
NPHP4-203ENST00000378169 FABP4P15090 132 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 CD1BP29016 333 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 LYZP61626 148 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 MARS2Q96GW9 593 aaKnown RBP11.23□□□□□ -0.61
NPHP4-203ENST00000378169 PRNDQ9UKY0 176 aa11.23□□□□□ -0.61
NPHP4-203ENST00000378169 RNF222A6NCQ9 220 aa11.22□□□□□ -0.61
NPHP4-203ENST00000378169 MARCH11A6NNE9 402 aa11.22□□□□□ -0.61
NPHP4-203ENST00000378169 ZG16O60844 167 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms