RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 HOGA1Q86XE5 327 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 C11orf44Q8N8P7 122 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 AP3S1Q92572 193 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 SNAPC3Q92966 411 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 CITED1Q99966 193 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 BCL7BQ9BQE9 202 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 PLSCR3Q9NRY6 295 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 CEPT1Q9Y6K0 416 aa10.62□□□□□ -0.71
VPS28-202ENST00000377348 FAM25AB3EWG3 89 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 FAM25CB3EWG5 89 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 FAM25GB3EWG6 89 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 M0QZK8 103 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 FGF16O43320 207 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 NOL3O60936 208 aaKnown RBP10.61□□□□□ -0.71
VPS28-202ENST00000377348 CNTFRP26992 372 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 ARPC4P59998 168 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 SNX29P2Q8IUI4 249 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 Q8N9W7 124 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 DYNC2LI1Q8TCX1 351 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 CMTM3Q96MX0 182 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 SDHAF2Q9NX18 166 aa10.61□□□□□ -0.71
VPS28-202ENST00000377348 RBM7Q9Y580 266 aaKnown RBP10.61□□□□□ -0.71
VPS28-202ENST00000377348 SMIM31A0A1B0GVY4 71 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 H0YJW9 148 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 M0R1X1 148 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 CTDSP2O14595 271 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 PEX14O75381 377 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 CTXN2P0C2S0 81 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 SOX6P35712 828 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 ACTBP60709 375 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 ZNF383Q8NA42 475 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 WNT10AQ9GZT5 417 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 MIXL1Q9H2W2 232 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 GHITMQ9H3K2 345 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 IFT46Q9NQC8 304 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 EXTL2Q9UBQ6 330 aa10.6□□□□□ -0.71
VPS28-202ENST00000377348 PKD1L1Q8TDX9 2849 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 IGKV1D-13A0A0B4J2D9 117 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 CCDC160A6NGH7 325 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 LINC01548A6NM66 108 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 H7C2Y5 167 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 IGKV1-13P0DP09 117 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 PRSS3P35030 304 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 CBX5P45973 191 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 MMDQ15546 238 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 RNASE12Q5GAN4 147 aaKnown RBP10.59□□□□□ -0.71
VPS28-202ENST00000377348 LAX1Q8IWV1 398 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.59□□□□□ -0.71
VPS28-202ENST00000377348 OR5AN1Q8NGI8 311 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 CCDC59Q9P031 241 aaKnown RBP10.59□□□□□ -0.71
VPS28-202ENST00000377348 LINC00527Q9UJ94 153 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 ANAPC10Q9UM13 185 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 OR2W1Q9Y3N9 320 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 VWFP04275 2813 aa10.59□□□□□ -0.71
VPS28-202ENST00000377348 CMYA5Q8N3K9 4069 aa10.58□□□□□ -0.71
VPS28-202ENST00000377348 OR5H14A6NHG9 310 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 RGS5O15539 181 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 CD28P10747 220 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 LUMP51884 338 aaPredicted RBP10.58□□□□□ -0.72
VPS28-202ENST00000377348 C10orf99Q6UWK7 81 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 FAM71E2Q8N5Q1 922 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 OR5AP2Q8NGF4 316 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 GPX8Q8TED1 209 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 WIPF2Q8TF74 440 aaPredicted RBP10.58□□□□□ -0.72
VPS28-202ENST00000377348 NOL4LQ96MY1 436 aaPredicted RBP10.58□□□□□ -0.72
VPS28-202ENST00000377348 RASL11BQ9BPW5 248 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 RBM38Q9H0Z9 239 aaKnown RBP10.58□□□□□ -0.72
VPS28-202ENST00000377348 LIN7CQ9NUP9 197 aaKnown RBP10.58□□□□□ -0.72
VPS28-202ENST00000377348 NECAP2Q9NVZ3 263 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 GAB2Q9UQC2 676 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 WASHC3Q9Y3C0 194 aa10.58□□□□□ -0.72
VPS28-202ENST00000377348 MGAM2Q2M2H8 2515 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 NBR2O15453 112 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 TUSC2O75896 110 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 PMP2P02689 132 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 IGKV1-16P04430 117 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 OR5H8P0DN80 308 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 AADACP22760 399 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 FCGR2CP31995 323 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 MC5RP33032 325 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 RFX2P48378 723 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 SLC35E3Q7Z769 313 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 ZNF645Q8N7E2 425 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 OR8H1Q8NGG4 311 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 HSPB9Q9BQS6 159 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 SLIRPQ9GZT3 109 aaKnown RBP10.57□□□□□ -0.72
VPS28-202ENST00000377348 C6orf62Q9GZU0 229 aaPredicted RBP10.57□□□□□ -0.72
VPS28-202ENST00000377348 NBEAL1Q6ZS30 2694 aa10.57□□□□□ -0.72
VPS28-202ENST00000377348 FBN3Q75N90 2809 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 LINC00473A8K010 186 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 IGLV2-14P01704 120 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 IGHG2P01859 326 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 APOA2P02652 100 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 NAT1P18440 290 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 HLA-DMAP28067 261 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 DUTP33316 252 aaKnown RBP10.56□□□□□ -0.72
VPS28-202ENST00000377348 CDK10Q15131 360 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 CENPVQ7Z7K6 275 aaPredicted RBP10.56□□□□□ -0.72
VPS28-202ENST00000377348 LYSMD2Q8IV50 215 aa10.56□□□□□ -0.72
VPS28-202ENST00000377348 NPBQ8NG41 125 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms