RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 HIST1H2BMQ99879 126 aa12.02□□□□□ -0.49
HMGA1-203ENST00000374116 MTCH1Q9NZJ7 389 aa12.02□□□□□ -0.49
HMGA1-203ENST00000374116 FZR1Q9UM11 496 aa12.02□□□□□ -0.49
HMGA1-203ENST00000374116 RNF115Q9Y4L5 304 aa12.02□□□□□ -0.49
HMGA1-203ENST00000374116 H7C1Q1 480 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 ZNF573Q86YE8 665 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 TGIF2LXQ8IUE1 241 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 RNASEH2CQ8TDP1 164 aaKnown RBP12.01□□□□□ -0.49
HMGA1-203ENST00000374116 MRPL24Q96A35 216 aaKnown RBP12.01□□□□□ -0.49
HMGA1-203ENST00000374116 UBTD1Q9HAC8 227 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 SLC2A9Q9NRM0 540 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 FBXL17Q9UF56 701 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 CBY1Q9Y3M2 126 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 ATP23Q9Y6H3 246 aa12.01□□□□□ -0.49
HMGA1-203ENST00000374116 SPG11Q96JI7 2443 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 POLQO75417 2590 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 A8MWP6 167 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 LILRA1O75019 489 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 NAPSAO96009 420 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 OR5AC1P0C628 307 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 AADACP22760 399 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 GNG3P63215 75 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 TBC1D28Q2M2D7 210 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 SPATA46Q5T0L3 261 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 LIAT1Q6ZQX7 453 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 FAM185AQ8N0U4 392 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 BATF2Q8N1L9 274 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 GINS3Q9BRX5 216 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 C20orf24Q9BUV8 137 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 CDH20Q9HBT6 801 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 Q9N2K0 584 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 APCP25054 2843 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 UNC79Q9P2D8 2635 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 E7EQL1 145 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 DVL1O14640 695 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 DEDDO75618 318 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 ZNF205O95201 554 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 PPYP01298 95 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 SOD3P08294 240 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 FGF7P21781 194 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 RPL12P30050 165 aaKnown RBP12□□□□□ -0.49
HMGA1-203ENST00000374116 IL24Q13007 206 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 ELOBQ15370 118 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 MSMPQ1L6U9 139 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 FBXW12Q6X9E4 464 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 SPNS3Q6ZMD2 512 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 LGI3Q8N145 548 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 FAM169BQ8N8A8 192 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 RCC1LQ96I51 464 aaKnown RBP12□□□□□ -0.49
HMGA1-203ENST00000374116 C18orf12Q96KH6 178 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 TMEM204Q9BSN7 226 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 PKIBQ9C010 78 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 RIMS4Q9H426 269 aaPredicted RBP12□□□□□ -0.49
HMGA1-203ENST00000374116 PLEKHA2Q9HB19 425 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 C19orf12Q9NSK7 152 aa12□□□□□ -0.49
HMGA1-203ENST00000374116 CISD1Q9NZ45 108 aaKnown RBP12□□□□□ -0.49
HMGA1-203ENST00000374116 K7EPK0 472 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 DIRAS3O95661 229 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 NKX6-1P78426 367 aaPredicted RBP11.99□□□□□ -0.49
HMGA1-203ENST00000374116 JOSD1Q15040 202 aaPredicted RBP11.99□□□□□ -0.49
HMGA1-203ENST00000374116 SP6Q3SY56 376 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 PHLDA2Q53GA4 152 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 FAM71E2Q8N5Q1 922 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 R3HDM4Q96D70 268 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 ITPR2Q14571 2701 aa11.99□□□□□ -0.49
HMGA1-203ENST00000374116 KIR2DS1A0A191URI9 304 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 SYNGR1O43759 233 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 SMPD2O60906 423 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 TK1P04183 234 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 CTXN2P0C2S0 81 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 KIR2DS4P43632 304 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 SRPXP78539 464 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 IL13RA2Q14627 380 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 KIR2DS1Q14954 304 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 ZNF672Q499Z4 452 aaPredicted RBP11.98□□□□□ -0.49
HMGA1-203ENST00000374116 SSX8Q7RTT4 187 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 CD300LFQ8TDQ1 290 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 MSI2Q96DH6 328 aaKnown RBP11.98□□□□□ -0.49
HMGA1-203ENST00000374116 GPR61Q9BZJ8 451 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 ACTR3CQ9C0K3 210 aaPredicted RBP11.98□□□□□ -0.49
HMGA1-203ENST00000374116 EIF5A2Q9GZV4 153 aaKnown RBP11.98□□□□□ -0.49
HMGA1-203ENST00000374116 PLEKHF2Q9H8W4 249 aa11.98□□□□□ -0.49
HMGA1-203ENST00000374116 TRDCB7Z8K6 153 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 ZNF674Q2M3X9 581 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 C3orf36Q3SXR2 165 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 SOHLH1Q5JUK2 328 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 FOXRED2Q8IWF2 684 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 Q8WTZ3 238 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 OR51I2Q9H344 312 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 TRBV6-6A0A0A6YYG2 114 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 BORCS7-ASMTA0A0B4J1R7 106 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 MPPED1O15442 326 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 DUSP1P28562 367 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 IL2RGP31785 369 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 P2RY1P47900 373 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 CAMLGP49069 296 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 FABP6P51161 128 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 RND3P61587 244 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 OR8G1Q15617 311 aa11.97□□□□□ -0.49
HMGA1-203ENST00000374116 OR2T2Q6IF00 324 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms