RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 HYLS1Q96M11 299 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 GSX2Q9BZM3 304 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 NMES1Q9C002 83 aa15.3■□□□□ 0.04
CLN3-204ENST00000357857 A0A087X0M5 115 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 PIGBOS1A0A0B4J2F0 54 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 A0A1B0GX30 115 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 M0R1X1 148 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 PROP1O75360 226 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 ODF3L1Q8IXM7 274 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 C8orf31Q8N9H6 132 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 MARVELD3Q96A59 401 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 C2orf50Q96LR7 162 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 ONECUT1Q9UBC0 465 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 TMED3Q9Y3Q3 217 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 SPG11Q96JI7 2443 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 TENM4Q6N022 2769 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 SAA2-SAA4A0A096LPE2 208 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 hCG_1809904A0A1W2PP81 198 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 A0A1W2PPE2 198 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 DUXBA0A1W2PPF3 345 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 A0A1W2PR64 198 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 A0A1W2PRV1 198 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 KIAA1324LA8MWY0 1029 aaPredicted RBP15.29■□□□□ 0.04
CLN3-204ENST00000357857 SAA2P0DJI9 122 aaPredicted RBP15.29■□□□□ 0.04
CLN3-204ENST00000357857 DUTP33316 252 aaKnown RBP15.29■□□□□ 0.04
CLN3-204ENST00000357857 LMO4P61968 165 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 TCTEX1D1Q8N7M0 179 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 TMEM133Q9H2Q1 129 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 COMMD9Q9P000 198 aa15.29■□□□□ 0.04
CLN3-204ENST00000357857 LINC00473A8K010 186 aa15.28■□□□□ 0.04
CLN3-204ENST00000357857 KRTAP10-9P60411 292 aa15.28■□□□□ 0.04
CLN3-204ENST00000357857 IAH1Q2TAA2 248 aaPredicted RBP15.28■□□□□ 0.04
CLN3-204ENST00000357857 ZNF585BQ52M93 769 aa15.28■□□□□ 0.04
CLN3-204ENST00000357857 LINC00311Q8N616 119 aa15.28■□□□□ 0.04
CLN3-204ENST00000357857 OR11H4Q8NGC9 324 aa15.28■□□□□ 0.04
CLN3-204ENST00000357857 ZNF596Q8TC21 504 aa15.28■□□□□ 0.04
CLN3-204ENST00000357857 A8MXK9 166 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 VWC2LB2RUY7 222 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 J3QR06 171 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 ZFP36P26651 326 aaKnown RBP15.27■□□□□ 0.04
CLN3-204ENST00000357857 FGL1Q08830 312 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 OR2B11Q5JQS5 317 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 ABHD12Q8N2K0 398 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 OR9G1Q8NH87 305 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 PPP1R1CQ8WVI7 109 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 ZNF251Q9BRH9 671 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 FAM212BQ9NTI7 297 aaPredicted RBP15.27■□□□□ 0.04
CLN3-204ENST00000357857 ZNRD1Q9P1U0 126 aa15.27■□□□□ 0.04
CLN3-204ENST00000357857 M0R1W7 72 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 RPA2P15927 270 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 LPAR6P43657 344 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 DSCR9P59020 149 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 LINC00205P59089 165 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 C1orf229Q6ZS94 237 aaPredicted RBP15.26■□□□□ 0.03
CLN3-204ENST00000357857 SPAG16Q8N0X2 631 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 DRAXINQ8NBI3 349 aaPredicted RBP15.26■□□□□ 0.03
CLN3-204ENST00000357857 S1PR3Q99500 378 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 GSKIPQ9P0R6 139 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 CRYBG3Q68DQ2 2970 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 BAHCC1Q9P281 2608 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 TRAV14DV4A0A0A6YYC5 116 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 ENSAO43768 121 aaKnown RBP15.26■□□□□ 0.03
CLN3-204ENST00000357857 IGKV1-39P01597 117 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 IGKV1D-39P04432 117 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 VDAC1P21796 283 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 ARF6P62330 175 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 LRRC37A5PQ49AS3 106 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 NCR3LG1Q68D85 454 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 ZBTB8BQ8NAP8 495 aaPredicted RBP15.26■□□□□ 0.03
CLN3-204ENST00000357857 OR10X1Q8NGY0 326 aa15.26■□□□□ 0.03
CLN3-204ENST00000357857 TOR1AO14656 332 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 RAMP3O60896 148 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 BRWD1-AS2P59051 145 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 LCN2P80188 198 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 ZNF816Q0VGE8 651 aaPredicted RBP15.25■□□□□ 0.03
CLN3-204ENST00000357857 Q8N7P7 452 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 GRPEL2Q8TAA5 225 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 CD300LFQ8TDQ1 290 aa15.25■□□□□ 0.03
CLN3-204ENST00000357857 IGHV4-30-2A0A087WSY4 118 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 IGHV2-26A0A0B4J1V2 119 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 PSMB6P28072 239 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 THBS3P49746 956 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 IL15RAQ13261 267 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 NMSQ5H8A3 153 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 ZNF833PQ6ZTB9 187 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 KIR3DL3Q8N743 410 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 RNASE11Q8TAA1 199 aaKnown RBP15.24■□□□□ 0.03
CLN3-204ENST00000357857 TNFRSF14Q92956 283 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 ADTRPQ96IZ2 230 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 SPIN2AQ99865 258 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 SPIN2BQ9BPZ2 258 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 CLEC7AQ9BXN2 247 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 PRELID3BQ9Y3B1 194 aa15.24■□□□□ 0.03
CLN3-204ENST00000357857 IGHV4-61A0A0C4DH41 118 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 FOXH1O75593 365 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 MPC2O95563 127 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 KIR2DS2P43631 304 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 PRRX1P54821 245 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 DLX1P56177 255 aa15.23■□□□□ 0.03
CLN3-204ENST00000357857 LSM10Q969L4 123 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms