RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 OR1A1Q9P1Q5 309 aa7.56□□□□□ -1.2
UPF2-202ENST00000357604 OR51B2Q9Y5P1 312 aa7.56□□□□□ -1.2
UPF2-202ENST00000357604 H3BUX3 64 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 OR2A4O95047 310 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 F2RP25116 425 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 KRTAP10-9P60411 292 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 PAX8Q06710 450 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 MARCH1Q8TCQ1 289 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 EEF1AKMT3Q96AZ1 226 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 OR2A7Q96R45 310 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 VPREB3Q9UKI3 123 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 LSM5Q9Y4Y9 91 aaKnown RBP7.55□□□□□ -1.2
UPF2-202ENST00000357604 PHF3Q92576 2039 aaKnown RBP7.55□□□□□ -1.2
UPF2-202ENST00000357604 TRBV6-7A0A0A0MS04 114 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 CT45A6P0DMU7 189 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 CT45A5P0DMU8 189 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 CT45A7P0DMV0 189 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 CT45A1Q5HYN5 189 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 LY6G6FQ5SQ64 297 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 DUSP18Q8NEJ0 188 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 CT45A3Q8NHU0 189 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 PPP1R14DQ9NXH3 145 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 KANTRA0A1W2PQU2 76 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 A6NHS1 94 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 IGSF11Q5DX21 431 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 RUSC1-AS1Q66K80 236 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 LYG2Q86SG7 212 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 CCDC190Q86UF4 302 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 PPP1R27Q86WC6 154 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 TEX45Q8NA69 505 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 MRPL20Q9BYC9 149 aaKnown RBP7.55□□□□□ -1.2
UPF2-202ENST00000357604 IGHV1-3A0A0C4DH29 117 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 ZNF737O75373 536 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 RCC1P18754 421 aaPredicted RBP7.55□□□□□ -1.2
UPF2-202ENST00000357604 OR11H6Q8NGC7 330 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 ARPC1AQ92747 370 aa7.55□□□□□ -1.2
UPF2-202ENST00000357604 POLR3KQ9Y2Y1 108 aaPredicted RBP7.55□□□□□ -1.2
UPF2-202ENST00000357604 APC2O95996 2303 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 PSMB11A5LHX3 300 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 RAG2P55895 527 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 CHD7Q9P2D1 2997 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 PIEZO1Q92508 2521 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 CEP250Q9BV73 2442 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 SAA2-SAA4A0A096LPE2 208 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 SAA2P0DJI9 122 aaPredicted RBP7.54□□□□□ -1.2
UPF2-202ENST00000357604 TGFBR1P36897 503 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 LMO4P61968 165 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 RPL8P62917 257 aaKnown RBP7.54□□□□□ -1.2
UPF2-202ENST00000357604 PAX5Q02548 391 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 MOGAT2Q3SYC2 334 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 TMEM177Q53S58 311 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 DYNLRB2Q8TF09 96 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 SFT2D2O95562 160 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 ASAH1Q13510 395 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 FXYD3Q14802 87 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 LEAP2Q969E1 77 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 COQ2Q96H96 371 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 MCRIP2Q9BUT9 160 aaKnown RBP7.54□□□□□ -1.2
UPF2-202ENST00000357604 TMPRSS13Q9BYE2 586 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 STRAPQ9Y3F4 350 aaKnown RBP7.54□□□□□ -1.2
UPF2-202ENST00000357604 FBXO24O75426 580 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 HOXB5P09067 269 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 SRSF1Q07955 248 aaKnown RBP eCLIP7.54□□□□□ -1.2
UPF2-202ENST00000357604 GVQW1Q8N7I0 195 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 RBPMSQ93062 196 aaKnown RBP7.54□□□□□ -1.2
UPF2-202ENST00000357604 IL22RA2Q969J5 263 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 CTSZQ9UBR2 303 aa7.54□□□□□ -1.2
UPF2-202ENST00000357604 PSPNO60542 156 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 NKX2-1P43699 371 aaPredicted RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 RND3P61587 244 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 TINAGL1Q9GZM7 467 aaPredicted RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 PLEKHA2Q9HB19 425 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 PEMTQ9UBM1 199 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 IGHV3-72A0A0B4J1Y9 119 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 TCRBP04435 133 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 ATP5IP56385 69 aaPredicted RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 ZNF660Q6AZW8 331 aaPredicted RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 EIF5AL1Q6IS14 154 aaKnown RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 IL17RELQ6ZVW7 336 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 OR5M8Q8NGP6 311 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 CHIAQ9BZP6 476 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 NXF2Q9GZY0 626 aaKnown RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 HOXA3O43365 443 aaPredicted RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 EXOSC2Q13868 293 aaKnown RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 MSMPQ1L6U9 139 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 AKAP14Q86UN6 197 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 ZFAND2BQ8WV99 257 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 TMEM230Q96A57 120 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 MISP3Q96FF7 219 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 PPP1R3EQ9H7J1 279 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 ARHGAP21Q5T5U3 1957 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 TFF1P04155 84 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 CAV2P51636 162 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 PLAC9Q5JTB6 97 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 Q8NFD4 153 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 LSM10Q969L4 123 aaKnown RBP7.53□□□□□ -1.2
UPF2-202ENST00000357604 SIRPDQ9H106 197 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 KLK11Q9UBX7 282 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 KCNK7Q9Y2U2 307 aa7.53□□□□□ -1.2
UPF2-202ENST00000357604 MED13Q9UHV7 2174 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms