RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 RHEBQ15382 184 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 TMEM14EPQ6UXP3 125 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 DPPA3Q6W0C5 159 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 BEND4Q6ZU67 534 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 FAM24BQ8N5W8 94 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 CYB561D1Q8N8Q1 229 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 TCTEX1D2Q8WW35 142 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 NINJ1Q92982 152 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 LURAP1Q96LR2 239 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 ZFHX2Q9C0A1 2572 aaPredicted RBP12.88□□□□□ -0.35
UPF3B-202ENST00000345865 DMXL2Q8TDJ6 3036 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 FAM90A26D6RGX4 464 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 PROP1O75360 226 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 EIF3GO75821 320 aaKnown RBP eCLIP12.88□□□□□ -0.35
UPF3B-202ENST00000345865 RPL35P42766 123 aaKnown RBP12.88□□□□□ -0.35
UPF3B-202ENST00000345865 LTC4SQ16873 150 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 LILRB2Q8N423 598 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 SCGB1C1Q8TD33 95 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 S100PBPQ96BU1 408 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 PLPPR2Q96GM1 343 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 CLN8Q9UBY8 286 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 DCHS1Q96JQ0 3298 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 TRAV1-1A0A0B4J248 108 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 hCG_1809904A0A1W2PP81 198 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 A0A1W2PR64 198 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 A0A1W2PRV1 198 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 LRRC30A6NM36 301 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 H3BQ15 152 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 CLDN1O95832 211 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 MT-ND4LP03901 98 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 OR8G2PQ6IF36 304 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 FAM169BQ8N8A8 192 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 SNIP1Q8TAD8 396 aaKnown RBP12.87□□□□□ -0.35
UPF3B-202ENST00000345865 WDR61Q9GZS3 305 aaKnown RBP12.87□□□□□ -0.35
UPF3B-202ENST00000345865 BIN3Q9NQY0 253 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 PSG11Q9UQ72 335 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 SRRM5B3KS81 715 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 HSPB1P04792 205 aaKnown RBP12.87□□□□□ -0.35
UPF3B-202ENST00000345865 RPS23P62266 143 aaKnown RBP12.87□□□□□ -0.35
UPF3B-202ENST00000345865 HBG1P69891 147 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 HBG2P69892 147 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 HNF4GQ14541 408 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 Q3ZCU0 254 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 IGFL3Q6UXB1 125 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 GCSAMQ8N6F7 178 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 ZDHHC16Q969W1 377 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 RBMXL1Q96E39 390 aaKnown RBP12.87□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF665Q9H7R5 613 aa12.87□□□□□ -0.35
UPF3B-202ENST00000345865 CEP250Q9BV73 2442 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 DSCAMO60469 2012 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 IGHV3OR15-7A0A075B7D8 119 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 M0R1B8 84 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 HBE1P02100 147 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 PTAFRP25105 342 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 AKR1D1P51857 326 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 FGF8P55075 233 aaPredicted RBP12.86□□□□□ -0.35
UPF3B-202ENST00000345865 SLC38A11Q08AI6 406 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 LCN15Q6UWW0 184 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 C22orf34Q6ZV56 151 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 RAB39BQ96DA2 213 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 YPEL4Q96NS1 127 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 PSMG3Q9BT73 122 aaPredicted RBP12.86□□□□□ -0.35
UPF3B-202ENST00000345865 GNG13Q9P2W3 67 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 WASF3Q9UPY6 502 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 PLCE1Q9P212 2302 aa12.86□□□□□ -0.35
UPF3B-202ENST00000345865 MAP1BP46821 2468 aaKnown RBP12.86□□□□□ -0.35
UPF3B-202ENST00000345865 UBE2L5PA0A1B0GUS4 154 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 LOC102723971A0A1B0GUV8 181 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 A0A1W2PPE3 182 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 ZG16O60844 167 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 HOXA1P49639 335 aaPredicted RBP12.85□□□□□ -0.35
UPF3B-202ENST00000345865 PAX5Q02548 391 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 CATR1Q13166 79 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 RNF212Q495C1 297 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 RCC1LQ96I51 464 aaKnown RBP12.85□□□□□ -0.35
UPF3B-202ENST00000345865 HCFC1P51610 2035 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 PMS2P5A8MQ11 134 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF727A8MUV8 499 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 IGKV1D-33P01593 117 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 IGKV1-33P01594 117 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 OR8U8P0C7N1 319 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 AGAP20933 346 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 RPS16P62249 146 aaKnown RBP12.85□□□□□ -0.35
UPF3B-202ENST00000345865 SPINK9Q5DT21 86 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 UTF1Q5T230 341 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 NCR3LG1Q68D85 454 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 Q6ZS92 163 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 ZNRF1Q8ND25 227 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 MBD3L1Q8WWY6 194 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 TAF15Q92804 592 aaKnown RBP eCLIP12.85□□□□□ -0.35
UPF3B-202ENST00000345865 OR2V2Q96R30 315 aa12.85□□□□□ -0.35
UPF3B-202ENST00000345865 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.85□□□□□ -0.35
UPF3B-202ENST00000345865 CLDN14O95500 239 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 RAB5AP20339 215 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 HTD2P86397 168 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 TCF15Q12870 199 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 MSMO1Q15800 293 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 KHDC3LQ587J8 217 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 VHLLQ6RSH7 139 aa12.84□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF429Q86V71 674 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms